View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11891_high_26 (Length: 239)
Name: NF11891_high_26
Description: NF11891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11891_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 10056755 - 10056979
Alignment:
| Q |
1 |
agtttaatggatatattatgtgaccgtgtaaatactaacatctaataagaataactatatat--ttatgcacatataccattaaagtggagtataatatg |
98 |
Q |
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| T |
10056755 |
agtttaatggatatattatgtgactgtgtaaatactaacatctaataagaataactatatatatttatgcacatataccat-aaagtggagtatagtttg |
10056853 |
T |
|
| Q |
99 |
gatttacacggtcggtgtgtatcctattttctctaagtttttcccaattttaaaacatattatgttatttaagtacaattnnnnnnnccggaaatatatt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10056854 |
gatttacacggtcggtgtgtatcctattttctctaagtttttcccaattttaaaacatattatgttatttaagtacaattaaaaaaaccggaaatatatt |
10056953 |
T |
|
| Q |
199 |
tgtagcagagcacatagtattgaaga |
224 |
Q |
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|||||||||||||||||||||||||| |
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| T |
10056954 |
tgtagcagagcacatagtattgaaga |
10056979 |
T |
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