View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11891_high_27 (Length: 229)
Name: NF11891_high_27
Description: NF11891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11891_high_27 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 1680065 - 1679843
Alignment:
| Q |
7 |
ggtcttggaggaggaccaacgtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgatataa |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1680065 |
ggtcttggaggaggaccaacgtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgacataa |
1679966 |
T |
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| Q |
107 |
caatttcaagccaaatgagttttggaaaagggagtgaagtgttaggggatggtgtggttactacacctttagttcaacgtgaacaagatatgacatcata |
206 |
Q |
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| T |
1679965 |
caatttcaagccaaatgagttttggaaaagggagtgaagtgttaggggaaggcgtggttactacacctttagttcaacgtgaacaagatatgacatcata |
1679866 |
T |
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| Q |
207 |
ttttgttacattactaggtatta |
229 |
Q |
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| T |
1679865 |
ttatgttacattactaggtatta |
1679843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 1661267 - 1661045
Alignment:
| Q |
7 |
ggtcttggaggaggaccaacgtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgatataa |
106 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1661267 |
ggtcttggaggaggaccaacatcactcatttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgatatca |
1661168 |
T |
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| Q |
107 |
caatttcaagccaaatgagttttggaaaagggagtgaagtgttaggggatggtgtggttactacacctttagttcaacgtgaacaagatatgacatcata |
206 |
Q |
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| T |
1661167 |
aaatttcaagccgaatgagttttggaaaagggagtcaagtgttaggggatggtgtggttactacacctttagttcaacgtgaacaagatatgacatcata |
1661068 |
T |
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| Q |
207 |
ttttgttacattactaggtatta |
229 |
Q |
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| T |
1661067 |
ttttgttacattactaggtatta |
1661045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 1668529 - 1668310
Alignment:
| Q |
7 |
ggtcttggaggaggaccaacgtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgatataa |
106 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1668529 |
ggtcttggaggaggaccaacatcactcatttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgatatca |
1668430 |
T |
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| Q |
107 |
caatttcaagccaaatgagttttggaaaagggagtgaagtgttaggggatggtgtggttactacacctttagttcaacgtgaacaagatatgacatcata |
206 |
Q |
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| T |
1668429 |
aaatttcaagccgaatgagttttggaaaagggagtcaagtgttaggaaatggtgttgttactactcctttggttcctcgtgaaaaagat---acatcata |
1668333 |
T |
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| Q |
207 |
ttttgttacattactaggtatta |
229 |
Q |
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| T |
1668332 |
ttttgttacattactaggtatta |
1668310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 176
Target Start/End: Complemental strand, 24546969 - 24546799
Alignment:
| Q |
6 |
aggtcttggaggaggaccaacgtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgatata |
105 |
Q |
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|||||||||| ||||||| |||||| ||||||||||||||| ||| ||||||||||| | ||||||||||||||||||||| |||| ||| | |
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| T |
24546969 |
aggtcttggaagaggacccttgtcactcgtttctcaaataggttcttcttttggaggcaagatgttttctcaatgtttggttccattccacactaaccct |
24546870 |
T |
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| Q |
106 |
acaatttcaagccaaatgagttttggaaaagggagtgaagtgttaggggatggtgtggttactacaccttt |
176 |
Q |
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| T |
24546869 |
agtattacaagcccaatgagttttggtaaaggaagtgaagtattggggaatggtgtggtttctacaccttt |
24546799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 177
Target Start/End: Complemental strand, 24539525 - 24539406
Alignment:
| Q |
58 |
ggaggcaaaaagttttctcaatgtttggttcctttcctcaccgatataacaatttcaagccaaatgagttttggaaaagggagtgaagtgttaggggatg |
157 |
Q |
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|||||||| | ||||||||||||||||||||| ||| ||| || | ||| |||||||||||| ||| || |||||||||||||| |||||| | | |
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| T |
24539525 |
ggaggcaacatgttttctcaatgtttggttccattcaacactgaccctagtattacaagccaaatgaatttcggtaaagggagtgaagttttagggaacg |
24539426 |
T |
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| Q |
158 |
gtgtggttactacaccttta |
177 |
Q |
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| T |
24539425 |
gtacggtttctacaccttta |
24539406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 6 - 176
Target Start/End: Complemental strand, 15798083 - 15797913
Alignment:
| Q |
6 |
aggtcttggaggaggaccaacgtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgatata |
105 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||| ||| |||||||||| | ||||||||||||||||||||| ||| || | |
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| T |
15798083 |
aggtcttggaagaggacccttgtcacttgtttctcaaataggttcttcccttggaggcaacatgttttctcaatgtttggttccattcaatactaaccct |
15797984 |
T |
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| Q |
106 |
acaatttcaagccaaatgagttttggaaaagggagtgaagtgttaggggatggtgtggttactacaccttt |
176 |
Q |
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| T |
15797983 |
agtatttcaagcccaatgagttttggtaaaggaagtgaagtattggggaatggtgtggtttctacaccttt |
15797913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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