View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11891_high_3 (Length: 724)
Name: NF11891_high_3
Description: NF11891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11891_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 688; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 688; E-Value: 0
Query Start/End: Original strand, 5 - 708
Target Start/End: Complemental strand, 19575758 - 19575055
Alignment:
| Q |
5 |
tggttaagttgactgagaaactttgatgctgtactgagcttgatgactcatttcatttatcttaatttgttgtattatgatttatagcatcctcgattta |
104 |
Q |
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| T |
19575758 |
tggttaagttgactgagaaactttgatgctgtactgagcttgatgactcatttcatttatcttaatttgttgtattatgatttatagcatcctcgattta |
19575659 |
T |
|
| Q |
105 |
aattgtaccttttacactgtttttacctcagtcactttatgatttgttgagtagttactttcatgtaaacatattaacactacaatttcaaattgatgtt |
204 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19575658 |
aattgtaccttttacactgtttttacctcagtcaccttatgatttgttgagtagttactttcatgtaaacatattaacactacaatttcaaattgatgtt |
19575559 |
T |
|
| Q |
205 |
gaaatggtgaatacttcctggatgaagttcacatatcaaattaacactgctagaatgtaatgttaaagatgacctattgttatagaattaattcatgttt |
304 |
Q |
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| T |
19575558 |
gaaatggtgaatacttcctggatgaagttcacatatcaaattaacagtgctagaatgtaatgttaaagatgacctattgttatagaattaattcatgttt |
19575459 |
T |
|
| Q |
305 |
gattttgaagtattgcaagttcataaggataggttcagttctgatgcagtctgaagtccaatcttcatgtcatgattgtttctaggtgtttttcttgctt |
404 |
Q |
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| T |
19575458 |
gattttgaagtattgcaagttcataaggataggttcagttctgatgcagtctgaagtccaatcttcatgtcatgattgtttctaggtgtttttcttgctt |
19575359 |
T |
|
| Q |
405 |
tacaagaatactcaaatcttctgactgagagtagtatgtttcaggtcttgtgtttatcagtgttttctttgtttggttggatagtaactttacaaaccaa |
504 |
Q |
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| T |
19575358 |
tacaagaatactcaaatcttctgactgagagtagtatgtttcaggtcttgtgtttatcagtgttttctttgtttggttggatagtaactttacaaaccaa |
19575259 |
T |
|
| Q |
505 |
attttcaataaccatgagttttatacaccctcacggcctcactgatcacattgtttcccttgtatcatgttattttaataatttctagagtttcagaagt |
604 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19575258 |
gttttcaataaccatgagttttatacaccctcacggcctcactgatcacattgtttcccttgtatcatgttattttaataatttctagagtttcagaagt |
19575159 |
T |
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| Q |
605 |
gagtgtgagctatttccttatagatctccacttcctgaagttgtttattcaaaacagaatttacagacgaacatcttgccaaattaggtcttttagtttg |
704 |
Q |
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| T |
19575158 |
gagtgtgagctatttccttatagatctccacttcctgaagttgtttattcaaaacagaatttacagatgaacatcttgccaaattaggtcttttagtttg |
19575059 |
T |
|
| Q |
705 |
tttc |
708 |
Q |
| |
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|||| |
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| T |
19575058 |
tttc |
19575055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 302 - 521
Target Start/End: Complemental strand, 19573709 - 19573486
Alignment:
| Q |
302 |
tttgattttgaagtattgcaagttcataaggataggtt----cagttctgatgcagtctgaagtccaatcttcatgtcatgattgtttctaggtgttttt |
397 |
Q |
| |
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|||| |||| |||||||| ||||||||| ||||||||| |||||| |||||||||||||||||||| |||||| || ||||||||||||||||||| |
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| T |
19573709 |
tttgcttttaaagtattggaagttcatatggataggttggttcagttcagatgcagtctgaagtccaattatcatgtgataattgtttctaggtgttttt |
19573610 |
T |
|
| Q |
398 |
cttgctttacaagaatactcaaatcttctgactgagagtagtatgtttcaggtcttgtgtttatcagtgttttctttgtttggttggatagtaactttac |
497 |
Q |
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|||| | ||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
19573609 |
cttgttctacaagaatactcaaatcttcagactgagagtagtttgtttccggtcttgtgtttatcagtgttctctttgttttgttggatagtaactttac |
19573510 |
T |
|
| Q |
498 |
aaaccaaattttcaataaccatga |
521 |
Q |
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|||||| ||||| |||||||||| |
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| T |
19573509 |
caaccaagttttcgataaccatga |
19573486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 19573850 - 19573767
Alignment:
| Q |
101 |
tttaaattgtaccttttacactgtttttacctcagtcactttatgatttgttgagtagttactttcatgtaaacatattaacact |
185 |
Q |
| |
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|||||||||||| |||||||||||||| ||| || | || || ||||||||||| | | |||||||||||||||||||||||||| |
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| T |
19573850 |
tttaaattgtactttttacactgtttt-accccatttaccttctgatttgttgacttgatactttcatgtaaacatattaacact |
19573767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 639 - 703
Target Start/End: Complemental strand, 19573333 - 19573269
Alignment:
| Q |
639 |
ctgaagttgtttattcaaaacagaatttacagacgaacatcttgccaaattaggtcttttagttt |
703 |
Q |
| |
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|||||||| ||| |||||||||||||||||| | | | |||||||| ||||| |||||||||||| |
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| T |
19573333 |
ctgaagttatttcttcaaaacagaatttacatatgcatatcttgcccaattacgtcttttagttt |
19573269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 183
Target Start/End: Complemental strand, 19573758 - 19573719
Alignment:
| Q |
144 |
tgatttgttgagtagttactttcatgtaaacatattaaca |
183 |
Q |
| |
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||||||||||| | |||||||||||||||||||||||||| |
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| T |
19573758 |
tgatttgttgacttgttactttcatgtaaacatattaaca |
19573719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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