View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11891_low_11 (Length: 420)
Name: NF11891_low_11
Description: NF11891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11891_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 19 - 407
Target Start/End: Original strand, 42213514 - 42213902
Alignment:
| Q |
19 |
tattctgcttcattcgattctggtgcgaacatctggttggctttctggttgtgtttagtaacaagctcctactttctgttgagcaaaaaagtcaactttt |
118 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42213514 |
tattctgcttcattcaattctggtgcgaacatctggttggctttctggttgtgtttagtaacaagctcctactttctgttgagcaaaaaagtcaactttt |
42213613 |
T |
|
| Q |
119 |
tcagtggctgcagagttaaacctgaagagaatgcttctttagctaacagaagcattccaaatgaaagaacagataatatcaatgatgcaacttctgtaga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42213614 |
tcagtggctgcagagttaaacctgaagagaatgcttctttagctaacagaagcattccaaatgaaagaacagataatatcaatgatgcaacttctgtaga |
42213713 |
T |
|
| Q |
219 |
tgatgcacttagctactctgacggcttagggtctccccacagtacttgttcatccacctattacgacgctttctctgagatttcagattttgacggaaca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42213714 |
tgatgcacttagctactctgacggcttagggtctccccacagtacttgttcatccacctattacgacgctttctctgagatttcagattttgacggaaca |
42213813 |
T |
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| Q |
319 |
agttactggcactctttgctaaatcttgacgaggaagacaatggatggctctcagattcaatgacatctgagaacccttcaactcctct |
407 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42213814 |
agttacgggcactctttgctaagtcttgacgaggaagacaatggatggctctcagattcaatgatatctgagaacccttcaactcctct |
42213902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 407
Target Start/End: Original strand, 42206681 - 42207072
Alignment:
| Q |
19 |
tattctgcttcattcgattctggtgcgaacatctggttggctttctggttgtgtttagtaacaagctcctactttctgttgagcaaaaaagtcaactttt |
118 |
Q |
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||||||||||||||| ||| | ||| |||| ||||||| |||| |||||||||||||| ||||||||||||||||||||||| | || |||| |||| |
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| T |
42206681 |
tattctgcttcattccatttggatgctaacagctggttgcctttttggttgtgtttagtgacaagctcctactttctgttgagggacaatatcaattttt |
42206780 |
T |
|
| Q |
119 |
tcagtggctgcagagttaaacctgaagagaatgcttctttagctaacagaagcattccaaatgaaagaacagataatatcaatgatgcaacttctgtaga |
218 |
Q |
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|||| || ||||||| ||| ||||||||||| ||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
42206781 |
tcagcagcagcagagtaaaatatgaagagaatgtttctttacataacaaaagcattccaaatgaaagaagagataatatcaatgatgcaactgctgtaga |
42206880 |
T |
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| Q |
219 |
tgatgcacttagctactctgacggcttagggtctccccacagtacttgttcatccacctattacgacgctttctctgagatttcagattttgacggaaca |
318 |
Q |
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||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||| |||| |||||| ||||||||||||||||| |||| |
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| T |
42206881 |
tgatgcacttagctactctgagggctcagggtctccccatagtacttgttcatccacctattatgacgttttctccgagatttcagattttgatagaact |
42206980 |
T |
|
| Q |
319 |
agttactggcactctttgctaaatcttgacgaggaagacaatggatggctct---cagattcaatgacatctgagaacccttcaactcctct |
407 |
Q |
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|||||| ||||||||||||||| |||||| |||||||||| || ||| ||| |||||||||||||| ||||||| |||||||||||||| |
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| T |
42206981 |
agttaccggcactctttgctaagtcttgaagaggaagacattgattgggtctcagcagattcaatgacacctgagaatccttcaactcctct |
42207072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 317 - 407
Target Start/End: Original strand, 42214214 - 42214304
Alignment:
| Q |
317 |
caagttactggcactctttgctaaatcttgacgaggaagacaatggatggctctcagattcaatgacatctgagaacccttcaactcctct |
407 |
Q |
| |
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||||||||| ||| ||||| |||| |||||| ||||||||| || |||||||||||||||||||| |||||| ||||||| | |||||| |
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| T |
42214214 |
caagttactcgcattctttactaagtcttgaagaggaagactctgcatggctctcagattcaatgatctctgaggacccttccagtcctct |
42214304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 407
Target Start/End: Original strand, 42214013 - 42214103
Alignment:
| Q |
317 |
caagttactggcactctttgctaaatcttgacgaggaagacaatggatggctctcagattcaatgacatctgagaacccttcaactcctct |
407 |
Q |
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||||||||| ||| ||||| |||| |||||| ||||||||| || |||||| |||||||||||| ||||||||| ||||| | |||||| |
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| T |
42214013 |
caagttactcgcattctttactaagtcttgaagaggaagactctgaatggctttcagattcaatggtatctgagaatccttctagtcctct |
42214103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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