View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11891_low_12 (Length: 414)
Name: NF11891_low_12
Description: NF11891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11891_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 15 - 399
Target Start/End: Complemental strand, 31455454 - 31455070
Alignment:
| Q |
15 |
atgaatagtaaaagagaacgaaatatagatattgtgatggtggtagcttctcttaaaaccttagccaaaaatattaaattttgatcttgtcccataatag |
114 |
Q |
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| T |
31455454 |
atgaatagtaaaagagaacgaaatatagatattgtgatggtggtagcttctcttaaaaccttagccaaaaatattaaattttgatcttggcccataatag |
31455355 |
T |
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| Q |
115 |
aaaaaagctttactttgttttccattttcttcatttcactaagttgcttagaaatttccttctttgccttctttctaaagcaatcatactcatatatgct |
214 |
Q |
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| T |
31455354 |
aaaaaagctttactttgttttccattttcttcatttcaccaagttgctttgaaatttccttctttgccttctttctaaagcaatcatactcatatatgct |
31455255 |
T |
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| Q |
215 |
gctttcaatgcttgaagttgaatttcctcgtcttctacgtatagcggattgaagtgtttccacatgttccttgagattcaagagtaattcccttgatgaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31455254 |
gctttcaatgcttgaagttgaatttcctcgtcttctacgtatagccgattgaagtgtttccacatgttccttgagattcaagagtaattcccttgatgaa |
31455155 |
T |
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| Q |
315 |
ctacatgcatctaaaagtgtaactgaaccacttaatgaatcttccactagcttcccattttgatagtgtaaaagtgcttgttgtg |
399 |
Q |
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| T |
31455154 |
ccacatgcatctaaaagtgtaactgaaccacttaatgaatcttccactagcttcccattttgatagtgtaaaagtgcttgttgtg |
31455070 |
T |
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