View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11891_low_13 (Length: 410)
Name: NF11891_low_13
Description: NF11891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11891_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 11 - 398
Target Start/End: Original strand, 6406138 - 6406527
Alignment:
| Q |
11 |
tgagattgtgttagccgcagattctctatgatatcaaattttgtaactaaactcgcgccaaaaattttattaatgtgcgtcttcaatagatagcgatttt |
110 |
Q |
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| T |
6406138 |
tgagattgtgttagctgcagattctctatgatatcaaattttgcaatcaaactcgcgccaaaaatttcatcaatgtgcatcttcaatagatagcgatttt |
6406237 |
T |
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| Q |
111 |
aaccactagatcaatcaacaagataacaaagggttgaattactacgatgaatatgaatctccaacttaaggtggacagggttcatcttgcctatcttctt |
210 |
Q |
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| T |
6406238 |
aaccactagatcaatcaacaaaataacaaagggttgaattactacgatgaatatgaatctccaacttgaggtggacagggttcatcttgcctatcttctt |
6406337 |
T |
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| Q |
211 |
catgctaatgatgacttataattaaattttctactataggtaactgccactattccaattttagcacagcatatattgttgctcaatcaaaataatatct |
310 |
Q |
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| T |
6406338 |
catgctaatgatgacttataattaaattttctactataggtaactaccactattccaattttagcacagcatatattgttgctcaatcaaaataatatct |
6406437 |
T |
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| Q |
311 |
tatcatgattcatgactgatacattatgataatcaactc--tcaccagatctcatcataatggaagagttgaaaaacatgatttcttcca |
398 |
Q |
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| T |
6406438 |
tatcatgattcatgactgatacattatgataatcaactctatcaccagatcacatcataatggaagagtagaaaaacatgatttcttcca |
6406527 |
T |
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