View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11891_low_15 (Length: 381)

Name: NF11891_low_15
Description: NF11891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11891_low_15
NF11891_low_15
[»] chr8 (4 HSPs)
chr8 (55-374)||(15190439-15190758)
chr8 (225-297)||(34174836-34174908)
chr8 (239-317)||(15744283-15744361)
chr8 (24-60)||(15195735-15195771)
[»] chr6 (1 HSPs)
chr6 (235-317)||(11969636-11969718)
[»] chr4 (6 HSPs)
chr4 (56-171)||(7629167-7629285)
chr4 (56-128)||(7606782-7606854)
chr4 (56-171)||(7615778-7615896)
chr4 (56-171)||(7637613-7637731)
chr4 (56-171)||(7655595-7655710)
chr4 (234-286)||(7399197-7399249)
[»] scaffold0190 (1 HSPs)
scaffold0190 (235-294)||(5160-5219)
[»] chr7 (1 HSPs)
chr7 (56-171)||(8935556-8935674)
[»] chr3 (2 HSPs)
chr3 (59-110)||(8103025-8103076)
chr3 (54-102)||(40146913-40146961)


Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 55 - 374
Target Start/End: Complemental strand, 15190758 - 15190439
Alignment:
Q  55 aaaaggaaatcgtatgggacgttgaattccatttggaaataaacgttcaagtgttggaggtaaagatatttgatggcaagaaccacgtgagatttcagca 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  15190758 aaaaggaaatcgtatgggacgttgaattccatttggaaataaacgttcaagtgttggaggtacagatatttgatggcaagaaccacgtgagatttcagcc 15190659  T
Q  155 agtgaattgatgaaatgtgaattggacattccatcaaggactacatggttcattgtccaactaacaaaagtaccgtcacttaactctgttacttggaatg 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15190658 agtgaattgatgaaatgtgaattggacattccatcaaggactacatggttcattgtccaactaacaaaagtaccgtcacttaactctgttacttggaatg 15190559  T
Q  255 caagcaatggatgtgatgtaccttcgtagtttataactccgttaagtggaaagaaggagtggaaaacggaaggaaggtaggtggatcctagaatgtcggc 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15190558 caagcaatggatgtgatgtaccttcgtagtttataactccgttaagtggaaagaaggagtggaaaaaggaaggaaggtaggtggatcctagaatgtcggc 15190459  T
Q  355 aacacatgtgttctctgctt 374  Q
    ||||||||||||||||||||    
T  15190458 aacacatgtgttctctgctt 15190439  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 225 - 297
Target Start/End: Original strand, 34174836 - 34174908
Alignment:
Q  225 taccgtcacttaactctgttacttggaatgcaagcaatggatgtgatgtaccttcgtagtttataactccgtt 297  Q
    |||| ||| |||||||||||||||| | |||||||||||| ||||||||||||| ||||||| ||||||||||    
T  34174836 taccatcaattaactctgttacttgaactgcaagcaatggttgtgatgtacctttgtagtttttaactccgtt 34174908  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 317
Target Start/End: Complemental strand, 15744361 - 15744283
Alignment:
Q  239 tctgttacttggaatgcaagcaatggatgtgatgtaccttcgtagtttataactccgttaagtggaaagaaggagtgga 317  Q
    ||||||||||| | |||||| |||||   |||||| |||||||||||| | |||||||||| |||||| || |||||||    
T  15744361 tctgttacttgtactgcaagtaatggcattgatgtcccttcgtagtttttcactccgttaaatggaaaaaatgagtgga 15744283  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 15195771 - 15195735
Alignment:
Q  24 aacggatcttaatttttggtgtctttatcataaaagg 60  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  15195771 aacggatcttaatttgtggtgtatttatcataaaagg 15195735  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 11969636 - 11969718
Alignment:
Q  235 taactctgttacttggaatgcaagcaatggatgtgatgtaccttcgtagtttataactccgttaagtggaaagaaggagtgga 317  Q
    ||||||||||||||||| |||||||||||| | |||||| ||||| |||||| ||||||||||||||||||| || |||||||    
T  11969636 taactctgttacttggactgcaagcaatggctctgatgtcccttcatagtttctaactccgttaagtggaaaaaatgagtgga 11969718  T

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Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 56 - 171
Target Start/End: Original strand, 7629167 - 7629285
Alignment:
Q  56 aaaggaaatcgtatgggacgttgaattccatttggaaataaacgttcaagtgttggaggtaaagatatt---tgatggcaagaaccacgtgagatttcag 152  Q
    |||||||||||||||||| ||||||| |||||||||||  ||||||||  ||||||||||  |||||||   ||||| ||| ||| ||||||||||||||    
T  7629167 aaaggaaatcgtatgggaagttgaataccatttggaaaccaacgttcagatgttggaggtttagatatttgatgatgacaacaactacgtgagatttcag 7629266  T
Q  153 caagtgaattgatgaaatg 171  Q
    |   |||||||||||||||    
T  7629267 cccatgaattgatgaaatg 7629285  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 7606782 - 7606854
Alignment:
Q  56 aaaggaaatcgtatgggacgttgaattccatttggaaataaacgttcaagtgttggaggtaaagatatttgat 128  Q
    |||||||||||||||||| ||||||| |||||||||||  |||| || |||||||| |||   ||||||||||    
T  7606782 aaaggaaatcgtatgggaagttgaataccatttggaaaccaacgctctagtgttgggggtttggatatttgat 7606854  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 171
Target Start/End: Original strand, 7615778 - 7615896
Alignment:
Q  56 aaaggaaatcgtatgggacgttgaattccatttggaaataaacgttcaagtgttggaggtaaagatatt---tgatggcaagaaccacgtgagatttcag 152  Q
    |||||||||||||||||  ||||||  |||||||||||  |||| || |||||||| |||  |||||||   ||||| ||| ||| |||||| |||||||    
T  7615778 aaaggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgatatttcag 7615877  T
Q  153 caagtgaattgatgaaatg 171  Q
    |   |||||||||||||||    
T  7615878 cccatgaattgatgaaatg 7615896  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 171
Target Start/End: Original strand, 7637613 - 7637731
Alignment:
Q  56 aaaggaaatcgtatgggacgttgaattccatttggaaataaacgttcaagtgttggaggtaaagatatt---tgatggcaagaaccacgtgagatttcag 152  Q
    |||||||||||||| || |||||||  |||||||||||  |||| || |||||||| |||  |||||||   ||||| ||| ||| ||||||||||||||    
T  7637613 aaaggaaatcgtataggccgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgagatttcag 7637712  T
Q  153 caagtgaattgatgaaatg 171  Q
    |    ||||||||||||||    
T  7637713 cccaggaattgatgaaatg 7637731  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 171
Target Start/End: Complemental strand, 7655710 - 7655595
Alignment:
Q  56 aaaggaaatcgtatgggacgttgaattccatttggaaataaacgttcaagtgttggaggtaaagatatttgatggcaagaaccacgtgagatttcagcaa 155  Q
    |||||||||||||| || ||||||||||||||||||||  |||| || || ||||| |    ||||||||||||   | |||||||||| ||||||||      
T  7655710 aaaggaaatcgtataggtcgttgaattccatttggaaaccaacgctccagcgttggggagttagatatttgatgatgacaaccacgtgacatttcagccc 7655611  T
Q  156 gtgaattgatgaaatg 171  Q
      ||||||||||||||    
T  7655610 acgaattgatgaaatg 7655595  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 7399197 - 7399249
Alignment:
Q  234 ttaactctgttacttggaatgcaagcaatggatgtgatgtaccttcgtagttt 286  Q
    |||||||||||||||| | |||||| | ||| |||||||| ||||||||||||    
T  7399197 ttaactctgttacttgtactgcaagtagtggttgtgatgtcccttcgtagttt 7399249  T

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Target: scaffold0190 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 5160 - 5219
Alignment:
Q  235 taactctgttacttggaatgcaagcaatggatgtgatgtaccttcgtagtttataactcc 294  Q
    |||||| |||||||||| |||||| ||||| |||||||| |||||||||||| |||||||    
T  5160 taactccgttacttggattgcaagtaatggttgtgatgttccttcgtagtttttaactcc 5219  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 171
Target Start/End: Complemental strand, 8935674 - 8935556
Alignment:
Q  56 aaaggaaatcgtatgggacgttgaattccatttggaaataaacgttcaagtgttggaggtaaagatattt---gatggcaagaaccacgtgagatttcag 152  Q
    |||||||||||||| || |||||||  ||||  |||||  ||||||| ||||||||||||  ||||||||   |||| ||| ||| ||||||||||||||    
T  8935674 aaaggaaatcgtattggccgttgaacaccatccggaaaccaacgttctagtgttggaggtttagatatttgatgatgacaacaactacgtgagatttcag 8935575  T
Q  153 caagtgaattgatgaaatg 171  Q
    |    ||||||||||||||    
T  8935574 cccaagaattgatgaaatg 8935556  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 8103025 - 8103076
Alignment:
Q  59 ggaaatcgtatgggacgttgaattccatttggaaataaacgttcaagtgttg 110  Q
    |||||||||||||||| |||||| |||| ||||||  |||||||||||||||    
T  8103025 ggaaatcgtatgggacattgaataccatctggaaaccaacgttcaagtgttg 8103076  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 40146961 - 40146913
Alignment:
Q  54 taaaaggaaatcgtatgggacgttgaattccatttggaaataaacgttc 102  Q
    |||||||||||||||||||| ||||||| ||| |||||||  |||||||    
T  40146961 taaaaggaaatcgtatgggatgttgaataccacttggaaaccaacgttc 40146913  T

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