View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11891_low_16 (Length: 371)
Name: NF11891_low_16
Description: NF11891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11891_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 10 - 355
Target Start/End: Complemental strand, 14242058 - 14241715
Alignment:
| Q |
10 |
atgagaggaaatggaagaggaaaaactgcaattgtgtggtccgaaagctcctctaacaacatagcttctgccaccttcaaagttgaagcctcggatttca |
109 |
Q |
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| T |
14242058 |
atgagaggaaatggaagaggaaaaactgcaattgtttggtccgaaagctcctctaacaacatagcttctgccaccttcaaagttgaagccttggatttca |
14241959 |
T |
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| Q |
110 |
ttgcctttggaattagcttcaaggtattttcatacttctatcaatattgtataccagaaaatgttgaacctaccaacaaaatcgtcattattattatgct |
209 |
Q |
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| T |
14241958 |
ttgcctttggaattagcttcaaggtattttcatacttctatcaatattgtataccagaaaatgctgaa-ctaccaacaaaatcgtcattattattatgct |
14241860 |
T |
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| Q |
210 |
aattatgaaaagaattaacatgttccagnnnnnnnttcaatgttgttgtattacagaatgatgcacctactgggatagcctatacttcacaaaatcaatc |
309 |
Q |
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| T |
14241859 |
aattatgaaaagaattaacattttccag-aaaaaattcaatgtttttgtattacagaatgatgcacctactgggatagcctatacttcacaaaatcaata |
14241761 |
T |
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| Q |
310 |
tgtggcagcagaaaaagcagcattttatcattgtgcattttatagt |
355 |
Q |
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| T |
14241760 |
tgtggcagcagaaaaagcagcattttatcattgtgcattttatagt |
14241715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 10 - 190
Target Start/End: Original strand, 12956541 - 12956721
Alignment:
| Q |
10 |
atgagaggaaatggaagaggaaaaactgcaattgtgtggtccgaaagctcctctaacaacatagcttctgccaccttcaaagttgaagcctcggatttca |
109 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
12956541 |
atgagaggaaatggaagaggaaaaactgccattgtttggtctgaaagctcctctgacaacatagcttctgccaccttcaaagttgaagcccccgatttca |
12956640 |
T |
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| Q |
110 |
ttgcctttggaattagcttcaaggtattttcatac-ttctatcaatattgtataccagaaaatgttgaacctaccaacaaaa |
190 |
Q |
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| T |
12956641 |
ttgcctttggaattagcttcaaggtaatatcatactttctactaatattgtataccataaaatgttgaa-ttaccaacaaaa |
12956721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 247 - 319
Target Start/End: Original strand, 12957147 - 12957219
Alignment:
| Q |
247 |
caatgttgttgtattacagaatgatgcacctactgggatagcctatacttcacaaaatcaatctgtggcagca |
319 |
Q |
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| T |
12957147 |
caatgttgttgcattatagaatgatgcacctacaggagttgcctatacttcacaaaatcaatctgtggcagca |
12957219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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