View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11891_low_17 (Length: 364)
Name: NF11891_low_17
Description: NF11891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11891_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 53677172 - 53676822
Alignment:
| Q |
1 |
tattcacctaaaatggtaaattatagtgctgaatctcatgatgaaggtaatttaatggctatttattatgctaggaaagaaaataattgaatttaaatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53677172 |
tattcacctaaaatggtaaattatagtgctgaatctcacgatgaaggtaatttaatggctatttattatgctaggaaagaaaataattgaatttaaatta |
53677073 |
T |
|
| Q |
101 |
agggaaagtagatattgaaattaaagaataggaatcaggattaggatgaatatttcaatttcattttagagtttagacaatttgttgaatctatactc-- |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
53677072 |
agggaaagtagatattgaaattaaagaataggaatcaggattaggatgaatatttcaatttcattttagagtttagacaatttgttgaatctatattctg |
53676973 |
T |
|
| Q |
199 |
--tgtatgtctttaacacaatttaatttaatgttactcattactcatttgtgattctactaaggaatgtgtttgttgaaatgctgctaagaattgaaagt |
296 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53676972 |
tatgtatgtcttgaacacaatttaatttaatgttactcattactcatttgtgattctactaaggaatgtgtttgttgaaatgctgctaagaattgaaagt |
53676873 |
T |
|
| Q |
297 |
tggttaagaacgaaagtagtttatgatgttaaggaattgtaatttgaaatg |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53676872 |
tggttaagaacgaaagtagtttatgatgttaaggaattgtaatttgaaatg |
53676822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 151 - 265
Target Start/End: Complemental strand, 34139310 - 34139200
Alignment:
| Q |
151 |
tatttcaatttcatttt-agagtttagacaatttgttgaatctatactctgtatgtctttaacacaatttaatttaatgttactcattactcatttgtga |
249 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34139310 |
tatttcaattttatttttagagtttagacaacttgttgaatctatattttgtatgtctttaacacaatttaattta-----actcattactcatttgtga |
34139216 |
T |
|
| Q |
250 |
ttctactaaggaatgt |
265 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
34139215 |
ttcttataaggaatgt |
34139200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 261 - 347
Target Start/End: Complemental strand, 34131280 - 34131193
Alignment:
| Q |
261 |
aatgtgtttgttgaaatgctgctaagaattgaaagttggttaagaacg-aaagtagtttatgatgttaaggaattgtaatttgaaatg |
347 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||||| |||||| ||||||||| ||| |||||||||||||||||| |
|
|
| T |
34131280 |
aatgtgtttgttgtaatgctgctaagagttgaaagttggttaagaacgaaaagtaatttatgatgctaacgaattgtaatttgaaatg |
34131193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University