View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11891_low_19 (Length: 347)

Name: NF11891_low_19
Description: NF11891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11891_low_19
NF11891_low_19
[»] chr4 (6 HSPs)
chr4 (62-341)||(553943-554222)
chr4 (99-322)||(1546067-1546296)
chr4 (142-194)||(1523994-1524046)
chr4 (242-341)||(1547467-1547566)
chr4 (234-288)||(558991-559045)
chr4 (234-298)||(6007657-6007721)
[»] chr7 (2 HSPs)
chr7 (262-341)||(7978057-7978136)
chr7 (155-193)||(7978198-7978236)
[»] chr8 (2 HSPs)
chr8 (242-299)||(17635428-17635486)
chr8 (247-292)||(17642713-17642758)
[»] chr6 (1 HSPs)
chr6 (138-187)||(9412450-9412499)
[»] chr3 (1 HSPs)
chr3 (151-187)||(51120336-51120372)
[»] chr2 (1 HSPs)
chr2 (244-292)||(3054763-3054811)


Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 62 - 341
Target Start/End: Complemental strand, 554222 - 553943
Alignment:
Q  62 ctctcaattcttctttacaacaacaaatcatcgcttcttccattcaaacaagaagcaaaacaaggagtcttgtaattgatttttactttcctgatgaatg 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  554222 ctctcaattcttctttacaacaacaaatcatcgcttcttccattcaaacaagaagcaaaacaaggagtcttgtaattgatttttactttcctgatgaatg 554123  T
Q  162 ttgggaatttgtcttcaaattcctcatcaacgatggtaatagcgatggcaacaaccgtttgtacttgagatgtctctcctttgtctctaaacagttctta 261  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  554122 ttgggaatttgtcttcaaattcctcatcaactatggtaatagcgatggcaacaaccgtttgtacttgagatgtctctcctttgtctctaaacagttctta 554023  T
Q  262 tccatcaccaaccgtctcagattctcactcaatatctcgaattcaacacgccctttacttcctcgccttttccaaaggtt 341  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  554022 tccatcaccaatcgtctcagattctcactcaatatctcgaattcaacacgccctttacttcctcgccttttccaaaggtt 553943  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 99 - 322
Target Start/End: Complemental strand, 1546296 - 1546067
Alignment:
Q  99 ttccattcaaacaagaagcaaaacaaggagtcttgtaa------ttgatttttactttcctgatgaatgttgggaatttgtcttcaaattcctcatcaac 192  Q
    |||||||||||||||||||||||||||||| |||| ||      |||||||||||||||  || || |||||||||||||||||||||||||||||||||    
T  1546296 ttccattcaaacaagaagcaaaacaaggaggcttgcaacatattttgatttttactttctcgacgagtgttgggaatttgtcttcaaattcctcatcaac 1546197  T
Q  193 gatggtaatagcgatggcaacaaccgtttgtacttgagatgtctctcctttgtctctaaacagttcttatccatcaccaaccgtctcagattctcactca 292  Q
    ||||  |||||| | |||||||| ||  | ||||| |  |||||||| || ||||| ||||| ||| | |  |||||||| ||| ||||||| |||||||    
T  1546196 gatgtcaatagccacggcaacaatcggctctacttcatgtgtctctctttagtctccaaacaattcctcttgatcaccaatcgtatcagattgtcactca 1546097  T
Q  293 atatctcgaattcaacacgccctttacttc 322  Q
     ||||   ||||||||||||||||| ||||    
T  1546096 ttatcagaaattcaacacgcccttttcttc 1546067  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 1523994 - 1524046
Alignment:
Q  142 ttttactttcctgatgaatgttgggaatttgtcttcaaattcctcatcaacga 194  Q
    |||||||| |||||||| |||||||||| ||||||||||||| ||||||||||    
T  1523994 ttttacttacctgatgactgttgggaatctgtcttcaaattcgtcatcaacga 1524046  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 341
Target Start/End: Original strand, 1547467 - 1547566
Alignment:
Q  242 ttgtctctaaacagttcttatccatcaccaaccgtctcagattctcactcaatatctcgaattcaacacgccctttacttcctcgccttttccaaaggtt 341  Q
    ||||||| ||||| ||| | |||||||||||||||||| ||||||| |||||| | | |||  ||||||||||||| ||||  ||||| ||| |||||||    
T  1547467 ttgtctccaaacaattcctctccatcaccaaccgtctccgattctctctcaatgtttggaagccaacacgccctttccttcagcgcctcttcaaaaggtt 1547566  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 559045 - 558991
Alignment:
Q  234 tctctcctttgtctctaaacagttcttatccatcaccaaccgtctcagattctca 288  Q
    ||||||| ||||||| ||||||||||| |||||||| |||||| | |||||||||    
T  559045 tctctcccttgtctcaaaacagttcttctccatcacgaaccgttttagattctca 558991  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 6007721 - 6007657
Alignment:
Q  234 tctctcctttgtctctaaacagttcttatccatcaccaaccgtctcagattctcactcaatatct 298  Q
    ||||||| | ||||| ||||||||| | |||||||||||| ||||| ||||||| |||| |||||    
T  6007721 tctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctcactatct 6007657  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 341
Target Start/End: Complemental strand, 7978136 - 7978057
Alignment:
Q  262 tccatcaccaaccgtctcagattctcactcaatatctcgaattcaacacgccctttacttcctcgccttttccaaaggtt 341  Q
    ||||||||||||||||| ||||| |||||||| || | || ||||||||||||||| || ||| |||| |||| ||||||    
T  7978136 tccatcaccaaccgtcttagattttcactcaacatatggagttcaacacgccctttcctccctagcctcttccgaaggtt 7978057  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 7978236 - 7978198
Alignment:
Q  155 atgaatgttgggaatttgtcttcaaattcctcatcaacg 193  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  7978236 atgagtgttgggaatttgtcttcaaattccttatcaacg 7978198  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 299
Target Start/End: Original strand, 17635428 - 17635486
Alignment:
Q  242 ttgtctctaaacagttct-tatccatcaccaaccgtctcagattctcactcaatatctc 299  Q
    |||| ||||||||||| | ||||||| ||||||||||||| ||||||||||||| ||||    
T  17635428 ttgtttctaaacagttttctatccattaccaaccgtctcatattctcactcaatgtctc 17635486  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 292
Target Start/End: Original strand, 17642713 - 17642758
Alignment:
Q  247 tctaaacagttcttatccatcaccaaccgtctcagattctcactca 292  Q
    ||||||||||| ||||| |||||||||||||||| ||| |||||||    
T  17642713 tctaaacagtttttatctatcaccaaccgtctcatattttcactca 17642758  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 9412499 - 9412450
Alignment:
Q  138 tgatttttactttcctgatgaatgttgggaatttgtcttcaaattcctca 187  Q
    ||||||||| || ||||||||||||||||||  | |||||||||||||||    
T  9412499 tgatttttatttacctgatgaatgttgggaaagtatcttcaaattcctca 9412450  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 51120336 - 51120372
Alignment:
Q  151 cctgatgaatgttgggaatttgtcttcaaattcctca 187  Q
    |||||||| |||||||||| |||||||||||||||||    
T  51120336 cctgatgactgttgggaatgtgtcttcaaattcctca 51120372  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 3054811 - 3054763
Alignment:
Q  244 gtctctaaacagttcttatccatcaccaaccgtctcagattctcactca 292  Q
    ||||||||||||||||| | |||||||||||||||| | ||||| ||||    
T  3054811 gtctctaaacagttcttcttcatcaccaaccgtctccgtttctctctca 3054763  T

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