View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11891_low_2 (Length: 812)
Name: NF11891_low_2
Description: NF11891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11891_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 698; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 698; E-Value: 0
Query Start/End: Original strand, 18 - 796
Target Start/End: Complemental strand, 46047464 - 46046692
Alignment:
| Q |
18 |
atgtagttgatgagtaatttgctttgagaagagtctatgcaaatattttcgctttgtgagaaatcgataccacacaagtaaatggatgcggccttttcct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
46047464 |
atgtagttgatgagtaatttgctttgagaagagtctatgcaaatattttcgctttgtgagaaatcgatacgacacaagtaaatggatgcggccttttcct |
46047365 |
T |
|
| Q |
118 |
atcttccgtggtggttgtcgagtagaaaacatcaaaagccaaaaacctcaaatgggtgttcaacaaattcttcacctgattctgttacgagggaatcatc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46047364 |
atcttccgtggtggttgtcgagtagaaaacatcaaaagccaaaaacctcaaatgggtgttcaacaaattcttcacctgattctgttacgagggaatcatc |
46047265 |
T |
|
| Q |
218 |
aaatgttttgagatttccttttgttaatgaggaaattgtgccttccacttcaagaaaggtgaaggacgaacgacatagtagggaagaggcgaaaattgat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46047264 |
aaatgttttgagatttccttttgttaatgaggaaattgtgccttccacttcaagaaaggtgaaggacgaacgacatagtagggaagaggcgaaaattgat |
46047165 |
T |
|
| Q |
318 |
aaggaatgtgattttgttatcgttccgtttgatggtggattcgttgattctgacgctgaatctgttgcttctgattggtctattggctggttggagcctc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46047164 |
aaggaatgtgattttgttatcgttccgtttgatggtggattcgttgattctgacgctgaatctgttgcttctgattggtctattggctggttggagcctc |
46047065 |
T |
|
| Q |
418 |
atggaaccggattttctaatgataatgacgaaagtcatgaaacagataacagttttgctgtgcttgttccttgttatggatacagttacggtgccatgtt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
46047064 |
atggaaccggattttctaatgataatgacgaaagtcatgaaacagataacagttttgctgtgcttgttccttgttatggatacaattacggtgccatgtt |
46046965 |
T |
|
| Q |
518 |
ggaggagggtcctaaaagcaacttactaaacaatgttgggaacttctcatatggtaaggctaaactaaaccactaagatagaattagaaataaattggat |
617 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46046964 |
ggaggagggtcctaaaagcaacgtactaaacaatgttgggaacttctcatatggtaaggctaaactaaaccactaagatagaattagaaataaattggat |
46046865 |
T |
|
| Q |
618 |
tgctagataaagtgttgatgttaatgtttctgttagaaataaatttggtgctttctgttttctcnnnnnnnnnnnnnncttgagtggtaaaatgctaatg |
717 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
46046864 |
tgctagataaag------tgttaatgtttctgttagaaataaatttggtgctttctgttttctctttttttattttttcttgagtggtaaaatgctaatg |
46046771 |
T |
|
| Q |
718 |
tgtatggttcctttgtttgtctgcagagagcaagaaatatgtggaaagttggatatcttcacttaataatacctgatgt |
796 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46046770 |
tgtatggttcctttgtttgtctgcagagagcaagaaatgtgtggaaagttggatatcttcacttaataatacctgatgt |
46046692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 373 - 422
Target Start/End: Original strand, 27969545 - 27969594
Alignment:
| Q |
373 |
ctgaatctgttgcttctgattggtctattggctggttggagcctcatgga |
422 |
Q |
| |
|
||||||||| || |||||||||||| ||||| |||||||| ||||||||| |
|
|
| T |
27969545 |
ctgaatctgatgattctgattggtcaattggatggttggaacctcatgga |
27969594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University