View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11891_low_20 (Length: 342)
Name: NF11891_low_20
Description: NF11891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11891_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 53677152 - 53677484
Alignment:
| Q |
1 |
atttaccattttaggtgaatattgaacaatagctaattccggtttccacgatggactgttaccagaaaatgcatctgcaatatacatcaaacagagttga |
100 |
Q |
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| T |
53677152 |
atttaccattttaggtgaatattgaacaatagctaattccggtttccaagatggactgttaccagaaaatgcatctgcaatatacatcaaacagagttga |
53677251 |
T |
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| Q |
101 |
gttttaatatttcacacatgaatttcatttaaaattatctgtaaatgaaataaaaatagtgaaacagtagtacctggtgagggggtgtaaacaggaccct |
200 |
Q |
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| T |
53677252 |
gttttaatatttcacacatgaatttcatttaaaattatctgtaaatgaaataaaaatagtgaaacagtagtacctggtgagggggtgtaaacaggaccct |
53677351 |
T |
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| Q |
201 |
gaactttgaagaagtgaacttgttcgtaatgataaagaagattcaaatagtgttttcttagtacaaaagaagcgcttgtagtagtagatgagaatctaaa |
300 |
Q |
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| T |
53677352 |
gaactttgaagaagtgaacttgttcgtaatgataaagaagattcaaatagtgttttcttagtacaaaagaagcgcttgtagtagtagatgagaatctaaa |
53677451 |
T |
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| Q |
301 |
tacactacctacttctctccatttcttctctgc |
333 |
Q |
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| T |
53677452 |
tacactacctacttctctccatttcttctctgc |
53677484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 210
Target Start/End: Original strand, 32985088 - 32985248
Alignment:
| Q |
45 |
tccacgatggactgttaccagaaaatgcatctgcaatatacatcaaacagagttgagttttaatatttcacacatgaatttcatttaaaattatctgtaa |
144 |
Q |
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| T |
32985088 |
tccacgagtgactgtttccagaaattgcacctgcaatataca---aaccgagttgagttttgggattgtacacatgaagttcatttatatctatctataa |
32985184 |
T |
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| Q |
145 |
atg-aaataaaaatagtgaaacagtagtacctggtgagggggtgtaaacaggaccctgaactttgaa |
210 |
Q |
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| T |
32985185 |
acgtaaagaaaaacagtgaaa---tagtaccttatgagggagtgtatataggaccctgaactttgaa |
32985248 |
T |
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