View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11891_low_25 (Length: 267)
Name: NF11891_low_25
Description: NF11891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11891_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 10056405 - 10056156
Alignment:
| Q |
1 |
ccatatagataaatttcagacaaagcatgcacatatatcacaactctagaattgccatttccataacaaagaagtaagattacaacaaagatagaataca |
100 |
Q |
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| T |
10056405 |
ccatatagataaatttcagacaaagcatgcatatatatcacaactctagaattgcaatttccataacaaagaagtaagattacaacaaagatagaata-- |
10056308 |
T |
|
| Q |
101 |
aaacaaagtgctacttataaattggtgccaaatagtgacaaacataaccgaggtttatgttgtatgtgtaaacaagttttaaactaacacgtgtcctaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10056307 |
-------gtgctacttataaattggtgccaaatagtgacaaacataaccgaggtttatgttgtatgtgtaaacaagttttaaactaacacgtgtcctaag |
10056215 |
T |
|
| Q |
201 |
tcgtgtcccctttgagttccccttcttctcccattggttttgcagtgcccatttcctttgct |
262 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| |
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| T |
10056214 |
tcgtgtcccctttgagtt---ctccttctcccattggttttgcagtgcccatttccattgct |
10056156 |
T |
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