View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11891_low_26 (Length: 243)
Name: NF11891_low_26
Description: NF11891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11891_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 5939006 - 5939197
Alignment:
| Q |
15 |
agacaaaaatggggttgacagtgtcacggataatgagattattttatgcaaagaaagaaatgaggattctgatggtaggtcttgatgctgctggaaaaac |
114 |
Q |
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| T |
5939006 |
agacaaaaatggggttgacagtgtcacggataatgagattattttatgcaaagaaagaaatgaggattctgatggtaggtcttgatgctgctggaaaaac |
5939105 |
T |
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| Q |
115 |
aacaatactctacaaactgaagcttggagaaattgtcactaccataccaaccataggttccaaatagtccattgaaaaataatatctattta |
206 |
Q |
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| T |
5939106 |
aacaatactctacaaactgaagcttggagaaattgtcactaccataccaaccataggttccaaatagtccattgaaaaatattatctattta |
5939197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 153
Target Start/End: Original strand, 14765855 - 14765943
Alignment:
| Q |
65 |
aagaaagaaatgaggattctgatggtaggtcttgatgctgctggaaaaacaacaatactctacaaactgaagcttggagaaattgtcac |
153 |
Q |
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| T |
14765855 |
aagaaggaaatgcgaattctgatggttggtctcgatgcagctggtaagaccaccattctctacaagctcaagcttggagaaattgtcac |
14765943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 173
Target Start/End: Original strand, 947161 - 947269
Alignment:
| Q |
65 |
aagaaagaaatgaggattctgatggtaggtcttgatgctgctggaaaaacaacaatactctacaaactgaagcttggagaaattgtcactaccataccaa |
164 |
Q |
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| T |
947161 |
aagaaggagatgagaattttgatggtaggtctcgatgcggctggtaagactactattttgtataaattgaagcttggagaaatcgttactaccatcccta |
947260 |
T |
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| Q |
165 |
ccataggtt |
173 |
Q |
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|||| |||| |
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| T |
947261 |
ccattggtt |
947269 |
T |
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