View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11891_low_27 (Length: 243)
Name: NF11891_low_27
Description: NF11891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11891_low_27 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 243
Target Start/End: Original strand, 1679251 - 1679486
Alignment:
| Q |
8 |
atggaatgcatatcttatcttatcttaatataataatacgaaaaaagttgttgtatattttctttaatcttaagtcataattcattattcaaacaagatc |
107 |
Q |
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| T |
1679251 |
atggaatgcatatcttatcttatcttaatgtaataatacgaaaaaagttgttgtatattttctttaatcttaagtcataattcattattcaaacaagatc |
1679350 |
T |
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| Q |
108 |
aaacactggtgctacaagttattgaaaaaatacatgacttgaatttgacttaactctattgtttggtgcaatctgttggcttgaaagatactatttgtct |
207 |
Q |
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| T |
1679351 |
aaacattggtgctacaagttattgtaaaaatacatgacttgaatttgacttaactctattgtttggtgcaatctgttggcttgaaagatactatttgtct |
1679450 |
T |
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| Q |
208 |
atctagatcaaaccctattaagtagtttgtttgtgc |
243 |
Q |
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| T |
1679451 |
atctagatcaaaccctattaagtagtttgtttgtgc |
1679486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 84 - 243
Target Start/End: Original strand, 1660529 - 1660688
Alignment:
| Q |
84 |
ataattcattattcaaacaagatcaaacactggtgctacaagttattgaaaaaatacatgacttgaatttgacttaactctattgtttggtgcaatctgt |
183 |
Q |
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| T |
1660529 |
ataaatcattattgaaacaagatcaaacaccggtgctaaaagctattgtgaagatacatgacttaaatttgacttgactctattgtttggtgcaatccgt |
1660628 |
T |
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| Q |
184 |
tggcttgaaagatactatttgtctatctagatcaaaccctattaagtagtttgtttgtgc |
243 |
Q |
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| T |
1660629 |
tgccttgaaagagaccacctgtctatctaaatcaaaccctattaagtaatttgattgtgc |
1660688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 1667847 - 1667953
Alignment:
| Q |
137 |
atacatgacttgaatttgacttaactctattgtttggtgcaatctgttggcttgaaagatactatttgtctatctagatcaaaccctattaagtagtttg |
236 |
Q |
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| T |
1667847 |
atacatgacttgaatttgatttgactctattgtttggtacaatctgttggcttgaaagagaccacttgtctatccaaatcaaatcctattaaataatttg |
1667946 |
T |
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| Q |
237 |
tttgtgc |
243 |
Q |
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| T |
1667947 |
attgtgc |
1667953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 1671422 - 1671528
Alignment:
| Q |
137 |
atacatgacttgaatttgacttaactctattgtttggtgcaatctgttggcttgaaagatactatttgtctatctagatcaaaccctattaagtagtttg |
236 |
Q |
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| T |
1671422 |
atacatgatttgaatttgacttgactttattgtttgttacaatctgttggtttgaaagagaccacttgtctatctaaatcaaacccaattaagtaatttg |
1671521 |
T |
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| Q |
237 |
tttgtgc |
243 |
Q |
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| T |
1671522 |
attgtgc |
1671528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 1667786 - 1667842
Alignment:
| Q |
61 |
tatattttctttaatcttaagtcataattcattattcaaacaagatcaaacactggt |
117 |
Q |
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| T |
1667786 |
tatattctctttaatcttaagtcatgatttattattgaaacaagataaaacactggt |
1667842 |
T |
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