View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11891_low_33 (Length: 228)
Name: NF11891_low_33
Description: NF11891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11891_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 3788962 - 3789164
Alignment:
| Q |
17 |
atatttaacaccactaattcaaaacaacaagaaataatagattataaaaacattaataattcgcccaagtaataaacttttggagattatgtgatgactg |
116 |
Q |
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| T |
3788962 |
atatttaacaccactaattcaaaacaacaagaaataatagattataaaaacattaataattcgcccaactaataaacttttgaagattatgtgatgactg |
3789061 |
T |
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| Q |
117 |
gccaccttcttctatattcttaatagtcattttcttcattttcaaacacattgcctttatatcatcatcaccaactacttgatccaccttcttattcatc |
216 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| || ||| |
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| T |
3789062 |
gccaccttcttctatattagtaatagtcattttcttcattttcaaacacatttcctttatgtcatcatcaccaactacttgatccaccttcttctttatc |
3789161 |
T |
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| Q |
217 |
tct |
219 |
Q |
| |
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||| |
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| T |
3789162 |
tct |
3789164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 3801136 - 3800943
Alignment:
| Q |
23 |
aacaccactaattcaaaacaacaagaaataatagattataaaaacattaataattcgcccaagtaataaacttttggagattatgtgatgactggccacc |
122 |
Q |
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|||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3801136 |
aacaacactaattcaaaacaacaag---taatagattataaacacattaataattcgcccaagtaataaacttttggagattatgtgatgactggccacc |
3801040 |
T |
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| Q |
123 |
ttcttctatattcttaatagtcattttcttcattttcaaacacattgcctttatatcatcatcaccaactacttgatccaccttcttattcatctct |
219 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| || |||||| |
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| T |
3801039 |
ttcttctatattagtaatagtcattttcttcattttcaaacacattgcctttatgtcatcatcaccaactacttgatacaccttcttctttatctct |
3800943 |
T |
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