View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11891_low_34 (Length: 227)
Name: NF11891_low_34
Description: NF11891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11891_low_34 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 2747710 - 2747917
Alignment:
| Q |
18 |
caacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataaaagcatgctgatgaacatgagtcaccgtatccttcc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
2747710 |
caacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataaaagaatgctgatgaacatgagtcaccgtatccgtcc |
2747809 |
T |
|
| Q |
118 |
attcgggtgctgcattagaccggtatatggataatataaagtttaatgaagacagaaaatatcaagatattacaccataaccgatcaaatttgtttacca |
217 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2747810 |
attcgggtgctgcattagaccgg--tatggataatataaagtttaatgaagacagaaaatatcaagatattacaccataaccgatcaaatttgtttacca |
2747907 |
T |
|
| Q |
218 |
tgttgtgatt |
227 |
Q |
| |
|
|||||||||| |
|
|
| T |
2747908 |
tgttgtgatt |
2747917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 2755755 - 2755945
Alignment:
| Q |
19 |
aacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataaaagcatgctgatgaacatgagtcaccgtatccttcca |
118 |
Q |
| |
|
||||||||| ||| |||||||| ||| ||| ||||||||||||||||||| ||| ||| |||||||| || |||||||||||||||||||||||| ||| |
|
|
| T |
2755755 |
aacctaccaaccaccccattatggcagaatctttgccaaaaccagtaaaatgatccttgataaaagcgtgttgatgaacatgagtcaccgtatccgtccg |
2755854 |
T |
|
| Q |
119 |
ttcgggtgctgcattagaccggtatatggataatataaagtttaatgaagacag-aaaatatcaagatattacaccataaccgatcaaatttgtt |
212 |
Q |
| |
|
|||||| ||||||||||||| | |||| || ||||||||| |||||| |||| ||||||| ||| ||||||||||||| ||||||||||||| |
|
|
| T |
2755855 |
ttcgggggctgcattagaccag--tatgcatgttataaagttcaatgaaaacagaaaaatattaag--attacaccataactgatcaaatttgtt |
2755945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 2373005 - 2373123
Alignment:
| Q |
19 |
aacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataaaagcatgctgatgaacatgagtcaccgtatccttcca |
118 |
Q |
| |
|
||||||||| || |||||||||||| ||| |||||||||||||||||| ||| ||| ||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
2373005 |
aacctaccaagcaccccattatagcagaatcattgccaaaaccagtaaaatgatccttgataaaagcatgttgatgaacatgagtcaccgtatccatccg |
2373104 |
T |
|
| Q |
119 |
ttcgggtgctgcattagac |
137 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
2373105 |
ttcgggggctgcattagac |
2373123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University