View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11891_low_5 (Length: 618)

Name: NF11891_low_5
Description: NF11891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11891_low_5
NF11891_low_5
[»] chr5 (21 HSPs)
chr5 (11-510)||(37398846-37399342)
chr5 (8-354)||(37380526-37380865)
chr5 (116-295)||(37441678-37441854)
chr5 (11-157)||(37825534-37825686)
chr5 (406-510)||(37370874-37370986)
chr5 (70-295)||(37391180-37391406)
chr5 (8-74)||(37595948-37596014)
chr5 (11-74)||(37534721-37534781)
chr5 (11-74)||(37641502-37641562)
chr5 (11-74)||(37713245-37713305)
chr5 (307-354)||(37441986-37442033)
chr5 (464-510)||(37389165-37389211)
chr5 (70-161)||(37534795-37534889)
chr5 (542-576)||(37398759-37398793)
chr5 (9-80)||(37411779-37411847)
chr5 (8-74)||(37391420-37391483)
chr5 (8-74)||(37704286-37704349)
chr5 (9-55)||(37437320-37437366)
chr5 (9-55)||(37698412-37698458)
chr5 (11-74)||(37441565-37441625)
chr5 (469-509)||(37644019-37644059)


Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 11 - 510
Target Start/End: Complemental strand, 37399342 - 37398846
Alignment:
Q  11 tgagaaagtgtgggaagtaaaatgagtaatcaacaacaacaagaagaacaagtgaaaggtaaaaaaggaccccatttagagcgacttagactaatactct 110  Q
    |||||||||||  ||||||||||||||||||||||||||||||||   |||||||||  |||||||||||||||||| ||||||||||||||||||||||    
T  37399342 tgagaaagtgtatgaagtaaaatgagtaatcaacaacaacaagaa---caagtgaaatttaaaaaaggaccccatttcgagcgacttagactaatactct 37399246  T
Q  111 cttaccaatattatttcttttttactttatgatgattttgtatgtaccaatccattacactctagttatttatatgtgaaacataactgaataagtcttg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37399245 cttaccaatattatttcttttttactttatgatgattttgtatgtaccaatccattacactctagttatttatatgtgaaacataactgaataagtcttg 37399146  T
Q  211 gcatgctcttgttttgtagttaggggtgctttcttcaaaccgtatgaggcactccgataaaaagaatttttgtggttgcaattttcnnnnnnnnataagg 310  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||        ||||||    
T  37399145 gcatgctcttgttttctagttaggggtgctttcttcaaaccgtacgaggcactccgataagaagattttttgtggttgcaattttctttattttataagg 37399046  T
Q  311 gaagaccaagacttttgaaccgtatgtaatacttaagctgcaattttatttattctatcaatttttgtccaaattaattactatttgataagctcactta 410  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37399045 gaagaccaaaacttttgaaccgtatgtaatacttaagctgcaattttatttattctatcaatttttgtccaaattaattactatttgataagcttactta 37398946  T
Q  411 cttcactttttacaaacatcaattcttttaatgataccaatgttaatgtatcagtaaagagggatattttccacctatttttaatcttgtgtaaaaaatt 510  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37398945 cttcaccttttacaaacatcaattcttttaaggataccaatgttaatgtatcagtaaagagggatattttccacctatttttaatcttgtgtaaaaaatt 37398846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 354
Target Start/End: Complemental strand, 37380865 - 37380526
Alignment:
Q  8 caatgagaaagtgtgggaagtaaaatgagtaatcaacaacaacaagaagaacaagtgaaaggtaaaaaaggaccccatttagagcgacttagactaatac 107  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  37380865 caatgagaaagtgtgggaagtaaaatgagtaagcaacaacaacaagaa---caagtgaaaggtaaaaaaggaccccatttagaacgacttagacttatac 37380769  T
Q  108 tctcttaccaatattatttcttttttactttatgatgattttgtatgtaccaatccattacactctagttatttatatgtgaaacataactgaataagtc 207  Q
    ||| ||| ||||||| ||||||||||| || ||||||   |||||||||||||||||||||||||||| |||||||||  |||||||||| || ||||||    
T  37380768 tctattatcaatattctttcttttttagttgatgatg---ttgtatgtaccaatccattacactctaggtatttatataggaaacataaccgagtaagtc 37380672  T
Q  208 ttggcatgctcttgttttgtagttaggggtgcttt-cttcaaaccgtatgaggcactccgataaaaagaatttttgtggttgcaattttcnnnnnnnnat 306  Q
    |||||||||| ||||||| |||| ||||||||||| |||||| ||||||||||||||||| ||| ||||||||||||||||||||||||         ||    
T  37380671 ttggcatgctattgttttatagtaaggggtgcttttcttcaa-ccgtatgaggcactccgctaagaagaatttttgtggttgcaatttt-atttttttat 37380574  T
Q  307 aagggaagaccaagacttttgaaccgtatgtaatacttaagctgcaat 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37380573 aagggaagaccaagacttttgaaccgtatgtaatacttaagctgcaat 37380526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 116 - 295
Target Start/End: Original strand, 37441678 - 37441854
Alignment:
Q  116 caatattatttcttttttactttatgatgattttgtatgtaccaatccattacactctagttatttatatgtgaaacataactgaataagtcttggcatg 215  Q
    ||||||| ||||||||||||||   || |||| ||||||||||||||||||| ||| |||||||||||||| |||||| | | ||| |||||||||||||    
T  37441678 caatattctttcttttttactt---gaggattatgtatgtaccaatccattaaactgtagttatttatatgggaaacacagccgaacaagtcttggcatg 37441774  T
Q  216 ctcttgttttgtagttaggggtgc-tttcttcaaaccgtatgaggcactccgataaaaagaatttttgtggttgcaatttt 295  Q
    ||||||||||||||| ||||  || ||||||| ||||||||||||||||||  ||| ||||||||||||||||||||||||    
T  37441775 ctcttgttttgtagtaagggacgcttttcttc-aaccgtatgaggcactccattaagaagaatttttgtggttgcaatttt 37441854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 37825534 - 37825686
Alignment:
Q  11 tgagaaagtgtgggaagtaaaatgagtaatcaacaacaacaag---aagaacaagtgaaaggtaaaaaaggaccccatttagagcgacttagac-taata 106  Q
    ||||||||||| |||||||||||||||||||||||||||||||   ||||| |||||||||||||||||||| |||||||||||  ||||| || |||||    
T  37825534 tgagaaagtgtaggaagtaaaatgagtaatcaacaacaacaagaacaagaaaaagtgaaaggtaaaaaaggatcccatttagagaaacttacacttaata 37825633  T
Q  107 ctctcttaccaatattatttcttttttactttatg--atgattttgtatgtac 157  Q
    |||||||  || |||| |||| ||||| |||||||  ||||||||| ||||||    
T  37825634 ctctcttctcagtattctttcctttttcctttatgatatgattttggatgtac 37825686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 406 - 510
Target Start/End: Complemental strand, 37370986 - 37370874
Alignment:
Q  406 acttacttcact-ttttacaaacatcaattcttttaatgataccaatgttaatgtatcag--------taaagagggatattttccacctatttttaatc 496  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||        |||||||||||||||| |||||||||||||||    
T  37370986 acttacttcactgttttacaaacatcaattcttttaaggataccaatgttaatgtattagagatgtcctaaagagggatatttt-cacctatttttaatc 37370888  T
Q  497 ttgtgtaaaaaatt 510  Q
    |||||||| |||||    
T  37370887 ttgtgtaagaaatt 37370874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 70 - 295
Target Start/End: Complemental strand, 37391406 - 37391180
Alignment:
Q  70 taaaaaaggaccccatttagagcgacttagact-aatactctcttaccaatattatttcttttttactttatgatgattttgtatgtaccaatccattac 168  Q
    |||| |||||||||||||||||| ||||| ||| || | ||||||  | ||| | |||| |||||| ||   |||||||||| ||||||||||  ||||     
T  37391406 taaacaaggaccccatttagagcaacttacacttaaaaatctcttctcgatagtctttcgtttttagtt---gatgattttgaatgtaccaattgattag 37391310  T
Q  169 actctagttatttatatgtgaaacataactgaataagtcttggcatgctcttgttttgtagttaggggtgcttt-cttcaaaccgtatgaggcactccga 267  Q
     ||| |  ||| |||||  |||||||||| ||| ||||||||||||||||||||| |||||| ||||||||||| |||||| |||||||||||||||| |    
T  37391309 cctcaatctatatatataggaaacataaccgaacaagtcttggcatgctcttgttatgtagtaaggggtgcttttcttcaa-ccgtatgaggcactcc-a 37391212  T
Q  268 taaaaa----gaatttttgtggttgcaatttt 295  Q
    ||| ||    || |||||||||||||||||||    
T  37391211 taagaagattgattttttgtggttgcaatttt 37391180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 37595948 - 37596014
Alignment:
Q  8 caatgagaaagtgtgggaagtaaaatgagtaatcaacaacaacaagaagaacaagtgaaaggtaaaa 74  Q
    |||||||||||||| ||||||||||||||||| || ||||||||| ||||| |||||||||||||||    
T  37595948 caatgagaaagtgtaggaagtaaaatgagtaagcagcaacaacaacaagaaaaagtgaaaggtaaaa 37596014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 37534721 - 37534781
Alignment:
Q  11 tgagaaagtgtgggaagtaaaatgagtaatcaacaacaacaagaagaacaagtgaaaggtaaaa 74  Q
    ||||||||||| ||||||||||||||||||||||||||||   ||||| |||||||||||||||    
T  37534721 tgagaaagtgtaggaagtaaaatgagtaatcaacaacaac---aagaaaaagtgaaaggtaaaa 37534781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 37641502 - 37641562
Alignment:
Q  11 tgagaaagtgtgggaagtaaaatgagtaatcaacaacaacaagaagaacaagtgaaaggtaaaa 74  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||   |||||||||||||||    
T  37641502 tgagaaagtgtaggaagtaaaatgagtaatcaacaacaacaacaag---aagtgaaaggtaaaa 37641562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 37713245 - 37713305
Alignment:
Q  11 tgagaaagtgtgggaagtaaaatgagtaatcaacaacaacaagaagaacaagtgaaaggtaaaa 74  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||   |||||||||||||||    
T  37713245 tgagaaagtgtgggaagtaaaatgagtaagcaacaacaacgagaag---aagtgaaaggtaaaa 37713305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 354
Target Start/End: Original strand, 37441986 - 37442033
Alignment:
Q  307 aagggaagaccaagacttttgaaccgtatgtaatacttaagctgcaat 354  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  37441986 aagggaagaccaagacttttgaaccatatgtaatacttaagttgcaat 37442033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 464 - 510
Target Start/End: Complemental strand, 37389211 - 37389165
Alignment:
Q  464 gtaaagagggatattttccacctatttttaatcttgtgtaaaaaatt 510  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||    
T  37389211 gtaaagagggatattttccacctgtttttaatcttgcgtaaaaaatt 37389165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 70 - 161
Target Start/End: Original strand, 37534795 - 37534889
Alignment:
Q  70 taaaaaaggaccccatttagagcgacttagact-aatactctcttaccaatattatttcttttttactttatg--atgattttgtatgtaccaat 161  Q
    |||||||||| |||||||||||  ||||| ||| |||||||||||  || ||||||||| ||||| |||||||  ||||||||| ||||||||||    
T  37534795 taaaaaaggatcccatttagagaaacttacacttaatactctcttctcagtattatttcctttttcctttatgatatgattttggatgtaccaat 37534889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 542 - 576
Target Start/End: Complemental strand, 37398793 - 37398759
Alignment:
Q  542 ttcatcaaaatcaaatcatcaaattaagcagtttt 576  Q
    |||||||||||||||||||||||||||||||||||    
T  37398793 ttcatcaaaatcaaatcatcaaattaagcagtttt 37398759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 37411847 - 37411779
Alignment:
Q  9 aatgagaaagtgtgggaagtaaaatgagtaatcaacaacaacaagaagaacaagtgaaaggtaaaaaaggac 80  Q
    |||||||| |||| ||||||||||||||||   |||| || ||| ||||||||||||||||||||| |||||    
T  37411847 aatgagaaggtgtaggaagtaaaatgagta---aacagcagcaacaagaacaagtgaaaggtaaaataggac 37411779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 37391483 - 37391420
Alignment:
Q  8 caatgagaaagtgtgggaagtaaaatgagtaatcaacaacaacaagaagaacaagtgaaaggtaaaa 74  Q
    |||||||| ||| | ||||||||||||||||| ||||||||||   | |||||||||||||||||||    
T  37391483 caatgagagagtataggaagtaaaatgagtaagcaacaacaac---atgaacaagtgaaaggtaaaa 37391420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 37704286 - 37704349
Alignment:
Q  8 caatgagaaagtgtgggaagtaaaatgagtaatcaacaacaacaagaagaacaagtgaaaggtaaaa 74  Q
    |||||||||||||| ||||||||||||||||| || ||| |||   |||||||||||||| ||||||    
T  37704286 caatgagaaagtgtaggaagtaaaatgagtaagcagcaataac---aagaacaagtgaaaagtaaaa 37704349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 37437320 - 37437366
Alignment:
Q  9 aatgagaaagtgtgggaagtaaaatgagtaatcaacaacaacaagaa 55  Q
    |||||||||||||||| |||||| ||||||| |||||||||| ||||    
T  37437320 aatgagaaagtgtgggtagtaaagtgagtaagcaacaacaacgagaa 37437366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 37698412 - 37698458
Alignment:
Q  9 aatgagaaagtgtgggaagtaaaatgagtaatcaacaacaacaagaa 55  Q
    |||||||  |||| ||||||||||||||||| |||||||||||||||    
T  37698412 aatgagagtgtgtaggaagtaaaatgagtaagcaacaacaacaagaa 37698458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 37441565 - 37441625
Alignment:
Q  11 tgagaaagtgtgggaagtaaaatgagtaatcaacaacaacaagaagaacaagtgaaaggtaaaa 74  Q
    ||||||||| | ||||||||||||||||   | || |||||||||||||| |||||||||||||    
T  37441565 tgagaaagtataggaagtaaaatgagta---agcagcaacaagaagaacatgtgaaaggtaaaa 37441625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 509
Target Start/End: Original strand, 37644019 - 37644059
Alignment:
Q  469 gagggatattttccacctatttttaatcttgtgtaaaaaat 509  Q
    |||||||||||||||| |||||| ||||||| |||||||||    
T  37644019 gagggatattttccacttattttaaatcttgcgtaaaaaat 37644059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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