View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11891_low_7 (Length: 471)
Name: NF11891_low_7
Description: NF11891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11891_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 136 - 458
Target Start/End: Original strand, 45722694 - 45723016
Alignment:
| Q |
136 |
gacacataatttgagcttgagtgctttagaatcaattaatcaaagacatggttagaccacgtttcaaattgaatagtttgtgcgttggtcatgctagaac |
235 |
Q |
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| T |
45722694 |
gacacataatttgagcttgagtgctttagaatcaattaatcaaagacatggttagaccacgtttcaagttgaatagtttgtgcgttggtcatgctagaac |
45722793 |
T |
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| Q |
236 |
acctcgtgttcgagcatgttctgcatcttcttttggatcaaaatttgcaaacagaactgagttttcaagcaacggagttcaagactctggaagagataat |
335 |
Q |
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| T |
45722794 |
acctcgtgttcgagcatgttctgcatcttcttttggatcaaaatttgcaaacagaactgagttttcaagcaacggagttcaagactctggaagagataat |
45722893 |
T |
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| Q |
336 |
aaaggggatgaaagtgggaataaagtgatggttgttgtggattccagctttgaagctaaaggagctcttgattgggcactctcacacactattcagagtc |
435 |
Q |
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| T |
45722894 |
aaaggggatgaaagtgggaataaagtgatggttgttgtggattccagctttgaagctaaaggagctcttgattgggcactctcacacactattcagagtc |
45722993 |
T |
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| Q |
436 |
aagataccgttgttcttgttcat |
458 |
Q |
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| T |
45722994 |
aagataccgttgttcttgttcat |
45723016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 45722575 - 45722649
Alignment:
| Q |
41 |
gtccaaagtcaagggtgtgagttgtgatgtgagtgtcacaatgaagctggccttcttcttcaattctgttccccaaatgcatg |
123 |
Q |
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| T |
45722575 |
gtccaaagtcaagggtgtgagttgtg-----agtgtcacaatgaagctggc---cttcttcaattatgttccccaaatgcatg |
45722649 |
T |
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