View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11891_low_9 (Length: 426)
Name: NF11891_low_9
Description: NF11891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11891_low_9 |
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| [»] scaffold0157 (1 HSPs) |
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Alignment Details
Target: scaffold0157 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 35339 - 35757
Alignment:
| Q |
1 |
cgtccacatcttaacaagattcattggagtttggatggtggtggcgaattttgtgtagagagaggacaactaaaagagacgctaaaagtaagcgtagttg |
100 |
Q |
| |
|
|||||| ||||||| ||||||||||||| ||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
35339 |
cgtccaaatcttaagaagattcattggattttggatggcggtggcgagttttgtgtagagagaggacaaataaaagagacgctaaaagtaagcgtacttg |
35438 |
T |
|
| Q |
101 |
aagatccaacaacaccaaccttcttctcagagcaaatatggggatcgtgtacctacacaaactccaacggtcaagtcagtaaacaatgtggatgataagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35439 |
aagatccaacaacaccaaccttcttctcagagcaaaaatggggatcgtgtacctgcacaaactccaacggtcaagtcagtaaacaacgtggatgataagc |
35538 |
T |
|
| Q |
201 |
tatttcaagtgagagtaagcatacatgagccaattcccctgagttagtcttattgtgtaggtttagggtttcggtccttgaacctttacctggactactg |
300 |
Q |
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|||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35539 |
tatttcgggtgagagtaagcatacatgagccaatgcccttgagttagtcttattgtgtaggtttagggtttcggtccttgaacctttacctggactactg |
35638 |
T |
|
| Q |
301 |
tccttatgggactattataagcaaattatgaggagatgatgatggatttgaacaggatggtctagattacctttagggagtcattattccattaaggttt |
400 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35639 |
tccttatgggaccattataagcaaattatgaggagataatgatggatctgaacaggatggtctagattacctttagggagtcattattccagtaaggttt |
35738 |
T |
|
| Q |
401 |
cgagtgatgtccatctcat |
419 |
Q |
| |
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||||||| |||||| |||| |
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| T |
35739 |
cgagtgaggtccatatcat |
35757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 12485138 - 12484720
Alignment:
| Q |
1 |
cgtccacatcttaacaagattcattggagtttggatggtggtggcgaattttgtgtagagagaggacaactaaaagagacgctaaaagtaagcgtagttg |
100 |
Q |
| |
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|||||| ||||||| ||||||||||||| ||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
12485138 |
cgtccaaatcttaagaagattcattggattttggatggcggtggcgagttttgtgtagagagaggacaaataaaagagacgctaaaagtaagcgtacttg |
12485039 |
T |
|
| Q |
101 |
aagatccaacaacaccaaccttcttctcagagcaaatatggggatcgtgtacctacacaaactccaacggtcaagtcagtaaacaatgtggatgataagc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12485038 |
aagatccaacaacaccaaccttcttctcagagcaaaaatggggatcgtgtacctgcacaaactccaacggtcaagtcagtaaacaacgtggatgataagc |
12484939 |
T |
|
| Q |
201 |
tatttcaagtgagagtaagcatacatgagccaattcccctgagttagtcttattgtgtaggtttagggtttcggtccttgaacctttacctggactactg |
300 |
Q |
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|||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12484938 |
tatttcgggtgagagtaagcatacatgagccaatgcccttgagttagtcttattgtgtaggtttagggtttcggtccttgaacctttacctggactactg |
12484839 |
T |
|
| Q |
301 |
tccttatgggactattataagcaaattatgaggagatgatgatggatttgaacaggatggtctagattacctttagggagtcattattccattaaggttt |
400 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12484838 |
tccttatgggaccattataagcaaattatgaggagataatgatggatctgaacaggatggtctagattacctttagggagtcattattccagtaaggttt |
12484739 |
T |
|
| Q |
401 |
cgagtgatgtccatctcat |
419 |
Q |
| |
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||||||| |||||| |||| |
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| T |
12484738 |
cgagtgaggtccatatcat |
12484720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 6 - 419
Target Start/End: Complemental strand, 12469009 - 12468596
Alignment:
| Q |
6 |
acatcttaacaagattcattggagtttggatggtggtggcgaattttgtgtagagagaggacaactaaaagagacgctaaaagtaagcgtagttgaagat |
105 |
Q |
| |
|
||||||||| ||||| |||||| | ||| ||| |||||||| ||||||||||||||| | || ||||||||||||||||||||| ||| |||||||| |
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|
| T |
12469009 |
acatcttaagaagatgtattggattctgggtggcggtggcgagttttgtgtagagagatggcagagaaaagagacgctaaaagtaagggtatttgaagat |
12468910 |
T |
|
| Q |
106 |
ccaacaacaccaaccttcttctcagagcaaatatggggatcgtgtacctacacaaactccaacggtcaagtcagtaaacaatgtggatgataagctattt |
205 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||| |||| | ||||||| |||||| ||||||| | |||| |||||| ||||| |
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| T |
12468909 |
ccaacaacaccaaccttcttctcagggcaaatatggggatggtgtacctgcacacaatccaacgatcaagttagtaaacgacgtgggtgataacttattt |
12468810 |
T |
|
| Q |
206 |
caagtgagagtaagcatacatgagccaattcccctgagttagtcttattgtgtaggtttagggtttcggtccttgaacctttacctggactactgtcctt |
305 |
Q |
| |
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| |||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| |
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|
| T |
12468809 |
cgggtgagagtaagcatacttgagccaatgcccttgagttagtcttattgtgtaggtttagggttttggtccttgaacctttacctggaaaattgtcctc |
12468710 |
T |
|
| Q |
306 |
atgggactattataagcaaattatgaggagatgatgatggatttgaacaggatggtctagattacctttagggagtcattattccattaaggtttcgagt |
405 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||| |||| ||||||||||||| || |||| |||||||||||| | |||||||||| |
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|
| T |
12468709 |
atgggacctctgtaagcaaattatgaggagatgatgatggatccaaacatgatggtctagattgccaccagggggtcattattccagtgcggtttcgagt |
12468610 |
T |
|
| Q |
406 |
gatgtccatctcat |
419 |
Q |
| |
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|| |||||| |||| |
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| T |
12468609 |
gaggtccatatcat |
12468596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 36 - 419
Target Start/End: Complemental strand, 12466339 - 12465957
Alignment:
| Q |
36 |
tggtggtggcgaattttgtgtagagagaggacaactaaaagagacgctaaaagtaagcgtagttgaagatccaacaacaccaaccttcttctcagagcaa |
135 |
Q |
| |
|
|||||||||||| ||||||||||||||| | || ||||||||||||||||||||| ||| ||||||||||| |||||||||| || || |||| |||| |
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|
| T |
12466339 |
tggtggtggcgagttttgtgtagagagatggcagagaaaagagacgctaaaagtaagggtatttgaagatccatcaacaccaacattttt-tcagggcaa |
12466241 |
T |
|
| Q |
136 |
atatggggatcgtgtacctacacaaactccaacggtcaagtcagtaaacaatgtggatgataagctatttcaagtgagagtaagcatacatgagccaatt |
235 |
Q |
| |
|
|||||||||| |||||||| |||| | ||||||| |||||| ||||||| | ||| |||||| |||||| ||||||||||||||||| ||||||||| |
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|
| T |
12466240 |
atatggggatggtgtacctgcacacaatccaacgatcaagttagtaaacgacttgggtgataacgtatttcgagtgagagtaagcatacctgagccaatg |
12466141 |
T |
|
| Q |
236 |
cccctgagttagtcttattgtgtaggtttagggtttcggtccttgaacctttacctggactactgtccttatgggactattataagcaaattatgaggag |
335 |
Q |
| |
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||| |||||||||| || ||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||| | | |||||||||||||||||| |
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|
| T |
12466140 |
cccttgagttagtcataatgtgtaggtttagggtttcggtccttgaacctttaccaggaaaactgtcctcatgggaccactgtaagcaaattatgaggag |
12466041 |
T |
|
| Q |
336 |
atgatgatggatttgaacaggatggtctagattacctttagggagtcattattccattaaggtttcgagtgatgtccatctcat |
419 |
Q |
| |
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||||| |||||| |||||||||||||||||| | | |||| |||||||||||| | ||||| |||||| |||||| |||| |
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|
| T |
12466040 |
atgataatggatccaaacaggatggtctagattgacatcagggggtcattattccagtgcggttttgagtgaggtccatatcat |
12465957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 51264197 - 51264155
Alignment:
| Q |
250 |
ttattgtgtaggtttagggtttcggtccttgaacctttacctg |
292 |
Q |
| |
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|||| ||||||||||||| ||| |||||||||||||||||||| |
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|
| T |
51264197 |
ttatagtgtaggtttaggtttttggtccttgaacctttacctg |
51264155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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