View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11892_high_11 (Length: 452)

Name: NF11892_high_11
Description: NF11892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11892_high_11
NF11892_high_11
[»] chr7 (2 HSPs)
chr7 (219-437)||(12871165-12871383)
chr7 (25-223)||(12870902-12871100)
[»] chr2 (6 HSPs)
chr2 (28-145)||(16525178-16525288)
chr2 (25-84)||(28966385-28966444)
chr2 (41-82)||(44026854-44026895)
chr2 (25-145)||(26482093-26482206)
chr2 (25-82)||(6099481-6099539)
chr2 (25-81)||(342451-342508)
[»] chr1 (4 HSPs)
chr1 (25-82)||(6127949-6128007)
chr1 (28-82)||(44486123-44486178)
chr1 (33-70)||(29952421-29952458)
chr1 (47-82)||(31605832-31605868)
[»] chr6 (1 HSPs)
chr6 (314-406)||(1476327-1476419)
[»] chr3 (1 HSPs)
chr3 (25-80)||(40268546-40268602)
[»] chr4 (3 HSPs)
chr4 (25-82)||(37980110-37980168)
chr4 (94-147)||(29195093-29195145)
chr4 (94-146)||(21344816-21344867)
[»] chr8 (1 HSPs)
chr8 (94-146)||(22268959-22269010)


Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 219 - 437
Target Start/End: Complemental strand, 12871383 - 12871165
Alignment:
Q  219 aacataagttcagaagcgcaaatttgcaaggagaggctttagttacctgatccagttcaaaagtaaagtaaccccttagcttgtgctccactatatgctt 318  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12871383 aacataaattcagaagcgcaaatttgcaacgagaggctttagttacctgatccagtgcaaaagtaaagtaaccccttagcttgtgctccactatatgctt 12871284  T
Q  319 tttggtaatcaagtacttcacaagatcacatatctgcaccgcagaatagacaaacccaatcccattcactgataagctatacctgcaacgcaaaatcaca 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12871283 tttggtaatcaagtacttcacaagatcacatatctgcaccgcagaatagacaaacccaatcacattcactgataagctatacctgcaacgcaaaatcaca 12871184  T
Q  419 cacatcacataacaaatta 437  Q
    |||||||||||||||||||    
T  12871183 cacatcacataacaaatta 12871165  T

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Target: chr7; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 12871100 - 12870902
Alignment:
Q  25 aagaagccaaactaacccattgaaattggcacggggagaatcgaacttgagaccttgacagccgacagaagcacactccaatgtcccaagccaaacacca 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||| |||||||||||    
T  12871100 aagaagccaaactaacccattgaaattggcacggggagaatcgaacttgaaaccttgacagccgacaggagcacactccaaggtcccaggccaaacacca 12871001  T
Q  125 tgaggccaacccaaatgggttttcacatctaattaagttaaaataaaacaaagattaaacggagtcactatagtctatctatcataatcacaaaaacat 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12871000 tgaggccaacccaaatgggttttcacatctaattaagttaaaataaaacaaagattaaacggagtcactatagtctatctatcataatcacaaaaacat 12870902  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 16525288 - 16525178
Alignment:
Q  28 aagccaaactaacccattgaaattggcac-ggggagaatcgaacttgagaccttgacagccgacagaagcacactccaatgtcccaagccaaacaccatg 126  Q
    |||||||||||| |||  ||||||||||| |||||||||||||| ||||||||||| || |       ||||||||||| |||||||||| ||||||||     
T  16525288 aagccaaactaatccaccgaaattggcaccggggagaatcgaacctgagaccttgagagtc-------gcacactccaacgtcccaagcc-aacaccatc 16525197  T
Q  127 aggccaacccaaatgggtt 145  Q
    |||||||||||| ||||||    
T  16525196 aggccaacccaagtgggtt 16525178  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 28966444 - 28966385
Alignment:
Q  25 aagaagccaaactaacccattgaaattggcacggggagaatcgaacttgagaccttgaca 84  Q
    ||||||| |||||| |||| |||||||||||  ||||||||||||| |||||||||||||    
T  28966444 aagaagctaaactagcccactgaaattggcaacgggagaatcgaacctgagaccttgaca 28966385  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 44026854 - 44026895
Alignment:
Q  41 ccattgaaattggcacggggagaatcgaacttgagaccttga 82  Q
    |||||||||||||||| ||| |||||||||||||||||||||    
T  44026854 ccattgaaattggcactgggggaatcgaacttgagaccttga 44026895  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 145
Target Start/End: Complemental strand, 26482206 - 26482093
Alignment:
Q  25 aagaagccaaactaacccattgaaattggcacgg-ggagaatcgaacttgagaccttgacagccgacagaagcacactccaatgtcccaagccaaacacc 123  Q
    ||||||||||| || |||| |||||||||||| | |||||||||||| |||||||||       || || |||||||||| | |||||||||| ||||||    
T  26482206 aagaagccaaattagcccactgaaattggcactgaggagaatcgaacctgagacctt-------gagaggagcacactcctaggtcccaagcc-aacacc 26482115  T
Q  124 atgaggccaacccaaatgggtt 145  Q
    || ||||||||| || ||||||    
T  26482114 atcaggccaacctaagtgggtt 26482093  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 6099481 - 6099539
Alignment:
Q  25 aagaagccaaactaacccattgaaattggca-cggggagaatcgaacttgagaccttga 82  Q
    |||||||||||||| ||||  || ||||||| ||||||||||||||| |||||||||||    
T  6099481 aagaagccaaactagcccaccgatattggcagcggggagaatcgaacctgagaccttga 6099539  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 342508 - 342451
Alignment:
Q  25 aagaagccaaactaacccattgaaattggca-cggggagaatcgaacttgagaccttg 81  Q
    |||||||||||| ||||||  |||||||||| || ||||||| |||||||||||||||    
T  342508 aagaagccaaaccaacccaccgaaattggcaccgaggagaattgaacttgagaccttg 342451  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 6127949 - 6128007
Alignment:
Q  25 aagaagccaaactaacccattgaaattggcac-ggggagaatcgaacttgagaccttga 82  Q
    |||||||||||||| ||||   |||||||||| ||||||||||||||||||||||||||    
T  6127949 aagaagccaaactagcccaccaaaattggcaccggggagaatcgaacttgagaccttga 6128007  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 44486123 - 44486178
Alignment:
Q  28 aagccaaactaacccattgaaattggca-cggggagaatcgaacttgagaccttga 82  Q
    ||||||||||||||||  |||||||||| |||||||||| ||| ||||||||||||    
T  44486123 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttga 44486178  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 29952421 - 29952458
Alignment:
Q  33 aaactaacccattgaaattggcacggggagaatcgaac 70  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  29952421 aaactaacccattgaaattggcactgggataatcgaac 29952458  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 31605832 - 31605868
Alignment:
Q  47 aaattggcac-ggggagaatcgaacttgagaccttga 82  Q
    |||||||||| ||||||||||||||||||||||||||    
T  31605832 aaattggcaccggggagaatcgaacttgagaccttga 31605868  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 406
Target Start/End: Original strand, 1476327 - 1476419
Alignment:
Q  314 tgctttttggtaatcaagtacttcacaagatcacatatctgcaccgcagaatagacaaacccaatcccattcactgataagctatacctgcaa 406  Q
    |||||||| |||||||||||| |||| |||| ||| || |||| | | ||||| ||||| |||||| ||||| |||  |||||||||||||||    
T  1476327 tgcttttttgtaatcaagtacatcactagatgacaaatttgcaaccctgaatacacaaatccaatcacattcgctgcaaagctatacctgcaa 1476419  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 40268602 - 40268546
Alignment:
Q  25 aagaagccaaactaacccattgaaattggca-cggggagaatcgaacttgagacctt 80  Q
    ||||||| |||||||||||  |||||||||| ||||||||||||||| |||||||||    
T  40268602 aagaagctaaactaacccaccgaaattggcatcggggagaatcgaacctgagacctt 40268546  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 37980110 - 37980168
Alignment:
Q  25 aagaagccaaactaacccattgaaattggcac-ggggagaatcgaacttgagaccttga 82  Q
    |||||||||||||| |||  |||||||| ||| |||||||||||||| |||||||||||    
T  37980110 aagaagccaaactagcccgctgaaattgacactggggagaatcgaacctgagaccttga 37980168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 29195145 - 29195093
Alignment:
Q  94 agcacactccaatgtcccaagccaaacaccatgaggccaacccaaatgggtttt 147  Q
    |||||||||||| |||||||||| |||||||  |||||||||||| ||||||||    
T  29195145 agcacactccaaggtcccaagcc-aacaccaccaggccaacccaagtgggtttt 29195093  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 21344867 - 21344816
Alignment:
Q  94 agcacactccaatgtcccaagccaaacaccatgaggccaacccaaatgggttt 146  Q
    |||||||||||| |||||||||| |||| ||| |||||||||||| |||||||    
T  21344867 agcacactccaaggtcccaagcc-aacatcatcaggccaacccaagtgggttt 21344816  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 22268959 - 22269010
Alignment:
Q  94 agcacactccaatgtcccaagccaaacaccatgaggccaacccaaatgggttt 146  Q
    |||||||||||| |||||||||| |||||||  |||||||||||| |||||||    
T  22268959 agcacactccaaggtcccaagcc-aacaccaccaggccaacccaagtgggttt 22269010  T

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