View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11892_high_17 (Length: 378)
Name: NF11892_high_17
Description: NF11892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11892_high_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 9e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 7139553 - 7139194
Alignment:
| Q |
18 |
actctatagatactcatggatatgtgtacccttaaagtatgtannnnnnnnnnnnnnnnaagaaatattttatcaaatacttataattaagttacttcat |
117 |
Q |
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| T |
7139553 |
actctatagatactcatggatatgtgtacccttaaagtatgtattttttatttatttttaagaaatattttatcaaatacttataattaagttacttcat |
7139454 |
T |
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| Q |
118 |
agatacccacatatgtatcatataaaagatgaatagagtnnnnnnnnnnnnngacaaggttgtaaaaattcaacagagatataaatgattcatgaattca |
217 |
Q |
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| T |
7139453 |
agatacccacatatgtatcatataaaagatgactagagtaaaaaaaaaaaaagacaaggttgtaaaaattcaacagagatatacatgattcatgaattca |
7139354 |
T |
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| Q |
218 |
acatgatgctatatttcttgaatcattagcgttatcttctaatggccattcnnnnnnnntgttatctcttaataaaccaggcttaaaagtcgnnnnnnnn |
317 |
Q |
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| T |
7139353 |
acatgatgctatactttttgaatcattagtgttatcttctaatgtccattcaaaaaaagtgttatctcttaataaaccaggcttaaaagttg-tgttttt |
7139255 |
T |
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| Q |
318 |
nnaaggatgatggtgataggagataagagccttaataattcaacatttgtagaaatttatt |
378 |
Q |
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| T |
7139254 |
ttaaggatgatggtgataggaggtaagagacttaataaatcaacatttgaagaaatttatt |
7139194 |
T |
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