View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11892_high_18 (Length: 372)
Name: NF11892_high_18
Description: NF11892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11892_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 7138872 - 7139031
Alignment:
| Q |
15 |
atgaatattgtttggtatgaatatgcaattacgagaaatttttgaagtttaaaataggttacaaataagataagttaacaaatttttgtatataaaactt |
114 |
Q |
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| T |
7138872 |
atgaatattgtttggtatgaatatgca-ttacgagaaatttttgaagtttaaaatagaatacaactaagataagttaacaaatttttgtatataaaactt |
7138970 |
T |
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| Q |
115 |
atatgcatgtaaaatgcaaaatacaagaaagaaatatgcatcaatcatttttcattaatat |
175 |
Q |
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| T |
7138971 |
atatgcatgtaaaatgcaaaatacaagaaagaaatatgcatcaatcatttttcattaatat |
7139031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 261 - 372
Target Start/End: Original strand, 7139118 - 7139229
Alignment:
| Q |
261 |
gtatagaattttcatataaattataatttgttttcatttgttaccatatcaacaaaagtattgttaaaaaactgaaaataaatttcttcaaatgttgagt |
360 |
Q |
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| T |
7139118 |
gtatagaattttcatataaattataatttgttttcatttgttaccatatcaacaaaagtattgttaaaaaactgaaaataaatttcttcaaatgttgatt |
7139217 |
T |
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| Q |
361 |
tattaagtctct |
372 |
Q |
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| T |
7139218 |
tattaagtctct |
7139229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 34734141 - 34734094
Alignment:
| Q |
81 |
aagataagttaacaaatttttgtatataaaacttatatgcatgtaaaat |
129 |
Q |
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| T |
34734141 |
aagatatgttaacaaattttt-tatataagacttatattcatgtaaaat |
34734094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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