View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11892_high_31 (Length: 253)
Name: NF11892_high_31
Description: NF11892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11892_high_31 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 42926012 - 42926255
Alignment:
| Q |
10 |
atgagatgaactgaagagttttcacacaggaagactcaaaagcaagcctgagaggagaaccgtcgtacgaatcaacggagggcacactgcggggactctg |
109 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42926012 |
atgacatgaattgaagagttttcacacaggaagactcaaaagcaagcctgagaggagaaccgtcgtacgaatcaacggagggcacactgcggggactctg |
42926111 |
T |
|
| Q |
110 |
ttgagtcggagccctaagttgctctgtcgtgtgagcgaaaaaacaaactggccggcgacaactggttccgtctttacacggctgagtacggtaacgcgaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42926112 |
ttgagtcggagccctaagttgctctgtcgtgtgagcgaaaaaacaaactggccggcgacaactggttccgtctttacacggctgagtacggtaacgcgaa |
42926211 |
T |
|
| Q |
210 |
ggatgaagccaacactcgaaaacaccatgagcaaactcacacga |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42926212 |
ggatgaagccaacactcgaaaacaccatgagcaaactcacacga |
42926255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 34340454 - 34340353
Alignment:
| Q |
137 |
cgtgtgagcgaaaaaacaaactggccggcgacaactggttccgtctttacacggctgagtacggtaacgcgaaggatgaagccaacactcgaaaacacca |
236 |
Q |
| |
|
|||||||||||| || ||||| |||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
34340454 |
cgtgtgagcgaagaagcaaacacgccggcgacagctggttccgtctttacacggctgagtacggtaacgtgcaggatgaagccaacactcgaaaacacca |
34340355 |
T |
|
| Q |
237 |
tg |
238 |
Q |
| |
|
|| |
|
|
| T |
34340354 |
tg |
34340353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 47894033 - 47893965
Alignment:
| Q |
173 |
ggttccgtctttacacggctgagtacggtaacgcgaaggatgaagccaacactcgaaaacaccatgagc |
241 |
Q |
| |
|
||||||||| ||||| ||||||| | |||||| |||||||||||||| || || |||||||||||||| |
|
|
| T |
47894033 |
ggttccgtcgttacaaagctgagttctgtaacgagaaggatgaagccagcattcaaaaacaccatgagc |
47893965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University