View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11892_high_36 (Length: 238)
Name: NF11892_high_36
Description: NF11892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11892_high_36 |
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| [»] chr8 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 13128681 - 13128910
Alignment:
| Q |
8 |
tgatctgaacttccctcctacccctcatgtttctaagaatgccaaaaatctgataagtcgggtatgattgttttacattatatctatctacatttacata |
107 |
Q |
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| T |
13128681 |
tgatctgaacttccctcctacccctcatgtttctaagaatgccaaaaatctgataagtcgggtatgattgttctacattatatctatctacatttacata |
13128780 |
T |
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| Q |
108 |
tccatgattaggctgtttttcttactgctatacgtaaattttgtgcagctcctggtaaaagattcttcaaaaaggctcccacttcagcagataatggagc |
207 |
Q |
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| T |
13128781 |
tccatgattaggctgtttttcttactgctatacgtaaa-tttgtgcagctactggtaaaagattcttcaaaaaggctcccacttcagaagataatggagc |
13128879 |
T |
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| Q |
208 |
atccttggataaaagagaatgcaaaccatac |
238 |
Q |
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| T |
13128880 |
atccttggataaaagagaatgcaaaccatac |
13128910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 107 - 232
Target Start/End: Original strand, 15024660 - 15024784
Alignment:
| Q |
107 |
atccatgattaggctgtttttcttactgctatacgtaaattttgtgcagctcctggtaaaagattcttcaaaaaggctcccacttcagcagataatggag |
206 |
Q |
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| T |
15024660 |
atccatgattaggatgttgttcttactgctatctgtaaattca-tacagctcctagtaaaagattcctcaagaagactctcacttcagaagataatggag |
15024758 |
T |
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| Q |
207 |
catccttggataaaagagaatgcaaa |
232 |
Q |
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| T |
15024759 |
catccttggataatcaagaatgcaaa |
15024784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 40507925 - 40508166
Alignment:
| Q |
8 |
tgatctgaacttccctcctacccctcatgtttctaagaatgccaaaaatctgataagtcgggtatgattgttttacattatat-------ctatctacat |
100 |
Q |
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| T |
40507925 |
tgatctgagcttccctcgtacccctcttgtttctaaaaaggccaaaaatctgataaatggggtatgattatatcatattatattatatatctatcttcat |
40508024 |
T |
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| Q |
101 |
ttacatatccatgattaggctgttttt-----cttactgctatacgtaaattttgtgcagctcctggtaaaagattcttcaaaaaggctcccacttcagc |
195 |
Q |
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| T |
40508025 |
tttcacatccatgattaggttgttcttttcttcttactgatctaagtaaattt-gtgtagctcctggtaaaagattcttcaaaaaggctttcacttcagg |
40508123 |
T |
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| Q |
196 |
agataatggagcatccttggataaaagagaatgcaaaccatac |
238 |
Q |
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| T |
40508124 |
agataatggagcatccttggataaaagagaatgcaaatcatac |
40508166 |
T |
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