View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11892_low_10 (Length: 462)
Name: NF11892_low_10
Description: NF11892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11892_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 576403 - 576857
Alignment:
| Q |
1 |
tgttattttccctaactattactgcacaacagagtttttcttaagtttaaggtccctgaaggaaatgaccctaattgattgtaactggaagaaggttggt |
100 |
Q |
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| T |
576403 |
tgttattttccctaactattattgcacaacagagtttttcttaagtttaaggtccctgaaggaaatgaccctaattgattgtaactggaagaaggttggt |
576502 |
T |
|
| Q |
101 |
actatcattatcacttgtccattgcgtcagaaattgttcattagggagtggaaagaccatgatgatgaaaatgatcaccatgacaacgaggaagaagtag |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
576503 |
actatcattatcacttgtccattgcttcagaaattgttcattagggattggaaagaccatgatgatgaagatgatcaccacgacaacgaggaagaagtag |
576602 |
T |
|
| Q |
201 |
aa---gaacttgctgaggaattaagtaatgatgtcaatgatattactgcagtggaagatctaaattatcatcatggccttataagaatcctttcaaatga |
297 |
Q |
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|| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
576603 |
aagaagaacttgctgaggaattaaataatgatgtcaatgatattactgcagtggaaaatctaaattatcatcatggccttataagaatcctttcaaatga |
576702 |
T |
|
| Q |
298 |
actggtatcgttcacatatgacggtgatctcatgaatgattattccttattttacacattctcagtctcgaatgcaactattaagcttcatgaacaacac |
397 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
576703 |
actggtatctttcacatatgacggtgatctcatgaatgattattccttattttacacattctcagtctcgaatgcaactattaagcttcatgaacaacac |
576802 |
T |
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| Q |
398 |
aataatatgttgcatgctggacattttatctacaaacttttcatagccctctctg |
452 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
576803 |
aataatatgttgcatgctggacattttatctacaaacttttcatagccctttctg |
576857 |
T |
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