View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11892_low_12 (Length: 421)
Name: NF11892_low_12
Description: NF11892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11892_low_12 |
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| [»] scaffold0070 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 8 - 404
Target Start/End: Complemental strand, 25489286 - 25488891
Alignment:
| Q |
8 |
atgatatatcatcaaagagttgttgctgcttttgtctcttgacatcttttacaaaaattcacaaataaaaagtaaatttcaaatgcatgttggtccattc |
107 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25489286 |
atgatatatcatgaat-agttgttgctgcttttgtctcttgacatcttttacaaaaattcacaaataaaaagtaaatttcaaatgcatgttggtccattc |
25489188 |
T |
|
| Q |
108 |
acctttggacgattctagtttctacataattgctggtttttcagttttggctgagaatttatcttaaaatctgtttgatgagacaagaacagtataagtt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25489187 |
acctttggacgattctagtttctacataattgctggtttttcagttttggctgagaatttatcttaaaatctgtttgatgagacaagaacagtataagtt |
25489088 |
T |
|
| Q |
208 |
actatttaagaggtaagaactatagtaagatgagacaaaggatttatttttattcttggttataagaaaactgagttttgcattaaacaattcctcatat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25489087 |
actatttaagaggtaagaactatagtaagatgagacaaaggatttattttgattcttggttataagaaaactgagttttgcattaaacaattcctcatat |
25488988 |
T |
|
| Q |
308 |
gagtagcttggactgtgcgcagtagttgttgtagaagatctttacacattaaaatacaatgtcggatgcttctttgtttattttgaaggacaacact |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25488987 |
gagtagcttggactgtgcgcagtagttgttgtagaagatctttacacattaaaatacaatgtcggatgcttctttgtttattttgaaggacaacact |
25488891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 54 - 370
Target Start/End: Complemental strand, 25385370 - 25385047
Alignment:
| Q |
54 |
ttttacaaaaattcacaaataaaaagtaaatttcaaatgcatgttggtccattcacctttggacgattctagtttctacataattgctggtttttcagtt |
153 |
Q |
| |
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||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||| |||||| |||| | ||||||| ||| |||| ||||| |
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| T |
25385370 |
ttttacaaaaattcacaaagaaaaactaaatttcaaatgcatggtggtccattcacctttggatgattctggtttttgcataattactgattttacagtt |
25385271 |
T |
|
| Q |
154 |
ttggctgagaatttatcttaaaatctgtttgatgagacaagaacagtataagttactatttaagaggtaa-------gaactatagtaagatgagacaaa |
246 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||| |
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| T |
25385270 |
ttggctaagaatttatcttaaaatctgtttgatgagacaagaacagtataagtttctatttaagagataatatataagaactatagtaagatgagacaaa |
25385171 |
T |
|
| Q |
247 |
ggatttatttttattcttggttataagaaaactgagttttgcattaaacaattcctcatatgagtagcttggactgtgcgcagtagttgttgtagaagat |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||| |
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| T |
25385170 |
ggatttatttttattcttggttataagaaaactgagttttgcattaaacaattcctcatttgagtagcttggactgtgcgcaggagatgttgtagaagat |
25385071 |
T |
|
| Q |
347 |
ctttacacattaaaatacaatgtc |
370 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
25385070 |
ctttacacattaaaatacaatgtc |
25385047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 80 - 207
Target Start/End: Complemental strand, 25603289 - 25603162
Alignment:
| Q |
80 |
taaatttcaaatgcatgttggtccattcacctttggacgattctagtttctacataattgctggtttttcagttttggctgagaatttatcttaaaatct |
179 |
Q |
| |
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||||||| ||||||| |||||||||||||| |||||| |||||||||||| ||||||||| |||||||||||||||| |||||||| |||||||||| |
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| T |
25603289 |
taaatttgtaatgcatattggtccattcaccattggactattctagtttctgcataattgcaggtttttcagttttggttgagaattcatcttaaaattg |
25603190 |
T |
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| Q |
180 |
gtttgatgagacaagaacagtataagtt |
207 |
Q |
| |
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||||||||| ||||||| ||||||||| |
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| T |
25603189 |
gtttgatgaaacaagaattgtataagtt |
25603162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 25799475 - 25799396
Alignment:
| Q |
235 |
agatgagacaaaggatttatttttattcttggttataagaaaactgagttttgcattaaacaattcctcatatgagtagc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||| ||||||||||||| |
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| T |
25799475 |
agatgagacaaaggatttatttttattcatggttataagaaaactgacttttgtattaaacaattcatcatatgagtagc |
25799396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 233 - 314
Target Start/End: Complemental strand, 25603102 - 25603021
Alignment:
| Q |
233 |
taagatgagacaaaggatttatttttattcttggttataagaaaactgagttttgcattaaacaattcctcatatgagtagc |
314 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
25603102 |
taagatgagagaaaggatttatttttattcttggttgcaagaatactggcttttgcattaaacaattcctcatatgagtagc |
25603021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 111 - 193
Target Start/End: Complemental strand, 25799547 - 25799465
Alignment:
| Q |
111 |
tttggacgattctagtttctacataattgctggtttttcagttttggctgagaatttatcttaaaatctgtttgatgagacaa |
193 |
Q |
| |
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|||||| ||||||||||||| ||||||||||| |||||||||||| ||||||||| |||||||||||| ||| |||||||||| |
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| T |
25799547 |
tttggatgattctagtttctgcataattgctgatttttcagtttttgctgagaatgtatcttaaaatcagttagatgagacaa |
25799465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 25321426 - 25321366
Alignment:
| Q |
68 |
acaaataaaaagtaaatttcaaatgcatgttggtccattcacctttggacgattctagttt |
128 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25321426 |
acaaataaaaactaaatttcaaatgcatgttggtccattcacctttggatgattctagttt |
25321366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 311 - 370
Target Start/End: Complemental strand, 25799371 - 25799312
Alignment:
| Q |
311 |
tagcttggactgtgcgcagtagttgttgtagaagatctttacacattaaaatacaatgtc |
370 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
25799371 |
tagcttggactgtgtgcaagagttgttgtagaagatccttacacattaaaatacaatgtc |
25799312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 370
Target Start/End: Complemental strand, 25319173 - 25319118
Alignment:
| Q |
315 |
ttggactgtgcgcagtagttgttgtagaagatctttacacattaaaatacaatgtc |
370 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
25319173 |
ttggactgtgtgcaagagttgttgtagaagatccttacacattaaaatacaatgtc |
25319118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 225 - 314
Target Start/End: Original strand, 18540 - 18629
Alignment:
| Q |
225 |
aactatagtaagatgagacaaaggatttatttttattcttggttataagaaaactgagttttgcattaaacaattcctcatatgagtagc |
314 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||| ||||||||||||| |
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| T |
18540 |
aactatagtaagatgagacaaaggatttatttttattcatggttataagaaaactggcttttgcattacacaattcttcatatgagtagc |
18629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 235 - 314
Target Start/End: Original strand, 38146 - 38225
Alignment:
| Q |
235 |
agatgagacaaaggatttatttttattcttggttataagaaaactgagttttgcattaaacaattcctcatatgagtagc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
38146 |
agatgagacaaaggatttatttttattcatggttataagaaaactgacttttgcattaaacaattcatcatatgagtagc |
38225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 68 - 150
Target Start/End: Original strand, 18458 - 18539
Alignment:
| Q |
68 |
acaaataaaaagtaaatttcaaatgcatgttggtccattcacctttggacgattctagtttctacataattgctggtttttca |
150 |
Q |
| |
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||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| |||||| | ||||||||||| ||||||| |
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| T |
18458 |
acaaagaaaaactaaatttcaaatgcatgttggtccattcacctttggatgattttagttt-tgcataattgctgatttttca |
18539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 311 - 370
Target Start/End: Original strand, 38250 - 38309
Alignment:
| Q |
311 |
tagcttggactgtgcgcagtagttgttgtagaagatctttacacattaaaatacaatgtc |
370 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38250 |
tagcttggactgtgtgcaagagttgttgtagaagatccttacacattaaaatacaatgtc |
38309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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