View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11892_low_13 (Length: 417)
Name: NF11892_low_13
Description: NF11892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11892_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 13 - 382
Target Start/End: Original strand, 2272418 - 2272787
Alignment:
| Q |
13 |
cagagaggattggaattgagacttctctggtttggctattttacagatcatgattcatgatccatcagaaagttttgctcaaggattcacacaaatccaa |
112 |
Q |
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| T |
2272418 |
cagaaaggattggaattgagacttctctggtttggctattttacagatcatgattcatgatccatcagaaagttttgctcaaggattcacacaaatccaa |
2272517 |
T |
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| Q |
113 |
gaggaatctatctgtttaattcatctgactagtttataattattgaattgacggtggaaattgattcatctttatcctcgctctaggaatgtagaataat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272518 |
gaggaatctatctgtttaattcatctgactagtttataattattgaattgacggtggaaattgattcatctttatcctcgctctaggaatgtagaataat |
2272617 |
T |
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| Q |
213 |
ttacgagatttggctcggtgtctaattttaccattctttttcataaatagcagaagaatgaataatgtttaaggacagacttaatgttcgtgtccaagac |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2272618 |
ttacgagatttggctcggtgtctaattttaccattctttttcataaatagcagaagaatgaataatgcttaaggacagacttaatgttcgtgtccaagac |
2272717 |
T |
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| Q |
313 |
aaagtgaatatatgttgatgttcatatcagtttattaatttgaattgtctagcttttcaattggttctgt |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272718 |
aaagtgaatatatgttgatgttcatatcagtttattaatttgaattgtctagcttttcaattggttctgt |
2272787 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 40772552 - 40772478
Alignment:
| Q |
127 |
tttaattcatctgactagtttataattattgaattgacggtggaaattgattcatctttatcctcgctctaggaa |
201 |
Q |
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|||||| ||||||||||||||| | ||||||||||||| ||||||||||||| ||||||| |||||| |||||| |
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| T |
40772552 |
tttaatccatctgactagtttacagttattgaattgacaatggaaattgattcctctttattctcgctttaggaa |
40772478 |
T |
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