View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11892_low_14 (Length: 403)
Name: NF11892_low_14
Description: NF11892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11892_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 22 - 387
Target Start/End: Complemental strand, 37846247 - 37845886
Alignment:
| Q |
22 |
gatagagggaaggtaaatcaaacaaggctgggaataggttatttttggaacaattagagcagctaccaccactgttttaacctctgtctcacaatttccc |
121 |
Q |
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| T |
37846247 |
gatagagggaaggtaaatcaaacaaggctgggaataggttatttttggaacaattagagcagctaccaccactgttttaacctctgtctcacaatttccc |
37846148 |
T |
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| Q |
122 |
attagttgaattacaagtccatggataccaactgcaggtctagctagacatgagtttccaatcatcccaatcatagactcccagtggaaatttatccgca |
221 |
Q |
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| T |
37846147 |
attagttgaattacaagtccatggataccaactgcaggtctag----acatgagtttccaatcatcccaatcatagactcccagtggaaatttatccgca |
37846052 |
T |
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| Q |
222 |
tcttgccaaaatccaaattcactattatctggaggttcggtatccacattaaatgtaacttttccatggagatggtcgtcaatactaacaactggaacat |
321 |
Q |
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| T |
37846051 |
tcttgccaaaatccaaagtcactattatctcgaggttcggcatccacattaaatgtaacttttccatggagatggtcgtcaatactaacaactggaacat |
37845952 |
T |
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| Q |
322 |
cagagaaaatattacaagtactacatggttgtagtgttgtattggctacaaatgcatcaccatctt |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37845951 |
cagagaaaatattacaagtactacatggttgtagtgttgtattggctacaaatgcatcaccatctt |
37845886 |
T |
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