View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11892_low_16 (Length: 400)
Name: NF11892_low_16
Description: NF11892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11892_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 103 - 384
Target Start/End: Complemental strand, 576456 - 576175
Alignment:
| Q |
103 |
gaccctaaacttaagaaaatctctgttgtgcaataatagttagtgaaaataacatgttttaaagtcaatgtcacaagattttgaaaattaatggtagaag |
202 |
Q |
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| T |
576456 |
gaccttaaacttaagaaaaactctgttgtgcaataatagttagggaaaataacatgttttaaagtcaatgtcacaagattttgaaaattaatggtagaag |
576357 |
T |
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| Q |
203 |
gaagtttgacgacttgactcatactaagttcaaacttggtcaatttttcagaagtaaaaaattgatcagggagaacaagtggttccttaactgtataaag |
302 |
Q |
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| T |
576356 |
gaagtttgatgacttgactcatactaagttcaaacttggtcaatttttcagaagtaaaaaattgatcagagagaacaagtggttccttaactgtataaag |
576257 |
T |
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| Q |
303 |
ttcaaggtttaattcttcaatattagggttaacaaaaatacttagccatttattaaccctaggtgcttccataccaacttca |
384 |
Q |
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| T |
576256 |
ttcaagctttaattcttcaatattagggttaacaaaaatacttagccatttagtaaccctaggtgcttccataccaacttca |
576175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 576375 - 576476
Alignment:
| Q |
9 |
aaaatcttgcgacattgactttaaaaaattataatttccctaactattaatgcacaacagagtttttctgaagtataaggtccctgaaagaaatgaccct |
108 |
Q |
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||||||||| |||||||||||||||| || || ||||||||||||||| ||||||||||||||||||| |||| ||||||||||||| ||||||||||| |
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| T |
576375 |
aaaatcttgtgacattgactttaaaacatgttattttccctaactattattgcacaacagagtttttcttaagtttaaggtccctgaaggaaatgaccct |
576474 |
T |
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| Q |
109 |
aa |
110 |
Q |
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|| |
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| T |
576475 |
aa |
576476 |
T |
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