View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11892_low_17 (Length: 386)

Name: NF11892_low_17
Description: NF11892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11892_low_17
NF11892_low_17
[»] chr8 (16 HSPs)
chr8 (1-280)||(25489268-25489547)
chr8 (118-280)||(25646202-25646369)
chr8 (118-245)||(24913783-24913915)
chr8 (153-280)||(25603826-25603951)
chr8 (181-280)||(25799544-25799640)
chr8 (218-280)||(25694637-25694699)
chr8 (207-280)||(25321934-25322004)
chr8 (323-373)||(25489590-25489640)
chr8 (323-373)||(25694742-25694792)
chr8 (131-220)||(25569119-25569208)
chr8 (323-371)||(24913658-24913706)
chr8 (323-371)||(25646412-25646460)
chr8 (147-195)||(25321889-25321937)
chr8 (323-373)||(25322047-25322095)
chr8 (323-373)||(25604000-25604050)
chr8 (91-119)||(25385414-25385442)
[»] scaffold0070 (3 HSPs)
scaffold0070 (118-245)||(17826-17951)
scaffold0070 (323-368)||(17704-17749)
scaffold0070 (91-119)||(18361-18389)
[»] scaffold0526 (1 HSPs)
scaffold0526 (121-166)||(11146-11191)
[»] chr3 (1 HSPs)
chr3 (121-166)||(11971234-11971279)


Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 25489268 - 25489547
Alignment:
Q  1 actattcatgatatatcatcaaagagtttaattactggaagcaattgnnnnnnnnnaaacatcttttttgcttgttgatttcgggcaaacaatatatttt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||         ||||||||||||||||||||||||||| ||||||||||||||||    
T  25489268 actattcatgatatatcatcaaatagtttaattactggaagcaattgtttttttttaaacatcttttttgcttgttgatttcgtgcaaacaatatatttt 25489367  T
Q  101 tgtacttttgacacaagattatgtagcaacctagtaagtagacaccacctgatatgacataaaagacagaaatattcaatcaaaaactgattagacagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25489368 tgtacttttgacacaagattatgtagcaacctagtaagtagacaccacctgatatgacataaaagacagaaatattcaatcaaaaactgattagaaagtt 25489467  T
Q  201 cagtaatagaagatcttttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489468 cagtaatagaagatcttttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 25489547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 118 - 280
Target Start/End: Original strand, 25646202 - 25646369
Alignment:
Q  118 attatgtagcaacctagtaagtaga-----caccacctgatatgacataaaagacagaaatattcaatcaaaaactgattagacagttcagtaatagaag 212  Q
    |||||||||||||||||||||||||     ||||||||| ||| |||||||||||||||||||||||  ||||||||||||||  |||||||||||||||    
T  25646202 attatgtagcaacctagtaagtagactagacaccacctgctataacataaaagacagaaatattcaactaaaaactgattagaaggttcagtaatagaag 25646301  T
Q  213 atcttttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 280  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25646302 atcttttcttcccattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 25646369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 118 - 245
Target Start/End: Complemental strand, 24913915 - 24913783
Alignment:
Q  118 attatgtagcaacctagtaagtagac-----accacctgatatgacataaaagacagaaatattcaatcaaaaactgattagacagttcagtaatagaag 212  Q
    ||||||||||||||||||||||||||     |||||||| ||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  24913915 attatgtagcaacctagtaagtagactagacaccacctgctataacataaaagacagaaatattcaaccaaaaactgattagaaagttcagtaatagaag 24913816  T
Q  213 atcttttcttcctattcttacacaatgagtcaa 245  Q
    |||||||||||| ||||||||||||||||||||    
T  24913815 atcttttcttcccattcttacacaatgagtcaa 24913783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 153 - 280
Target Start/End: Original strand, 25603826 - 25603951
Alignment:
Q  153 tatgacataaaagacagaaatattcaatcaaaa-actgattagacagttcagtaatagaagatcttttcttcctattcttacacaatgagtcaagaccct 251  Q
    ||||||| ||||| ||||||||||||| ||||| |||||||||| |||||||||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  25603826 tatgacaaaaaaggcagaaatattcaaccaaaaaactgattagaaagttcagtaatataagatcttttcttcccattcgtacacaatgagtcaagaccct 25603925  T
Q  252 tactactattctcctccaaagactgcacc 280  Q
     |||||   ||||||||||||||||||||    
T  25603926 cactac---tctcctccaaagactgcacc 25603951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 181 - 280
Target Start/End: Original strand, 25799544 - 25799640
Alignment:
Q  181 caaaaactgattagacagttcagtaatagaagatcttttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 280  Q
    ||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||   ||||||||||||||||||||    
T  25799544 caaaaactgattacaaagttcagtaatagaagatcttttcttcccattcttacacaatgattcaagaccctcactac---tctcctccaaagactgcacc 25799640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 25694637 - 25694699
Alignment:
Q  218 ttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 280  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25694637 ttcttcccattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 25694699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 207 - 280
Target Start/End: Original strand, 25321934 - 25322004
Alignment:
Q  207 tagaagatcttttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 280  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||   ||||||||||||||||||||    
T  25321934 tagaagatcttttcttcccattcttacacaatgagtcaagaccctcactac---tctcctccaaagactgcacc 25322004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 323 - 373
Target Start/End: Original strand, 25489590 - 25489640
Alignment:
Q  323 gagaggggatacaacataaatggatacaatacacacgatttacatgcttct 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489590 gagaggggatacaacataaatggatacaatacacacgatttacatgcttct 25489640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 373
Target Start/End: Original strand, 25694742 - 25694792
Alignment:
Q  323 gagaggggatacaacataaatggatacaatacacacgatttacatgcttct 373  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25694742 gagaggggatacaacataaatggatacagtacacacgatttacatgcttct 25694792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 131 - 220
Target Start/End: Original strand, 25569119 - 25569208
Alignment:
Q  131 ctagtaagtagacaccacctgatatgacataaaagacagaaatattcaatcaaaaactgattagacagttcagtaatagaagatcttttc 220  Q
    ||||||| ||||||||||||| ||||||| | |||| | |||||| |||  ||||| |||||||  ||||||||||||||||||||||||    
T  25569119 ctagtaactagacaccacctggtatgacagagaagaaataaatatgcaacaaaaaaatgattagcaagttcagtaatagaagatcttttc 25569208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 371
Target Start/End: Complemental strand, 24913706 - 24913658
Alignment:
Q  323 gagaggggatacaacataaatggatacaatacacacgatttacatgctt 371  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||    
T  24913706 gagaggggatacaacataaatggatagagtacacacgatttacatgctt 24913658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 371
Target Start/End: Original strand, 25646412 - 25646460
Alignment:
Q  323 gagaggggatacaacataaatggatacaatacacacgatttacatgctt 371  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||    
T  25646412 gagaggggatacaacataaatggatatagtacacacgatttacatgctt 25646460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 25321889 - 25321937
Alignment:
Q  147 acctgatatgacataaaagacagaaatattcaatcaaaaactgattaga 195  Q
    ||||| ||||||||||||| |||| |||||||| |||||||||||||||    
T  25321889 acctgctatgacataaaaggcagatatattcaaccaaaaactgattaga 25321937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 373
Target Start/End: Original strand, 25322047 - 25322095
Alignment:
Q  323 gagaggggatacaacataaatggatacaatacacacgatttacatgcttct 373  Q
    ||||||||||||||  |||||||||||| ||||||| ||||||||||||||    
T  25322047 gagaggggatacaa--taaatggatacagtacacacaatttacatgcttct 25322095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 373
Target Start/End: Original strand, 25604000 - 25604050
Alignment:
Q  323 gagaggggatacaacataaatggatacaatacacacgatttacatgcttct 373  Q
    ||||||| |||||| ||| ||||||| | ||||||||||||||||||||||    
T  25604000 gagagggtatacaatatatatggatatagtacacacgatttacatgcttct 25604050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 119
Target Start/End: Original strand, 25385414 - 25385442
Alignment:
Q  91 aatatatttttgtacttttgacacaagat 119  Q
    |||||||||||||||||||||||||||||    
T  25385414 aatatatttttgtacttttgacacaagat 25385442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 118 - 245
Target Start/End: Complemental strand, 17951 - 17826
Alignment:
Q  118 attatgtagcaacctagtaagtagacaccacctgatatgacataaaagacagaaatattcaatcaaaaactgattagacagttcagtaatagaagatctt 217  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||| | || ||||||||||||||| ||||||||||||||  |||||    
T  17951 attatgtagcaacctagtaagtagacaccacctgctataacataaaagacaaaaataattaaccaaaaactgattagaaagttcagtaataga--atctt 17854  T
Q  218 ttcttcctattcttacacaatgagtcaa 245  Q
    ||||||| ||||||||||||||||||||    
T  17853 ttcttcccattcttacacaatgagtcaa 17826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 323 - 368
Target Start/End: Complemental strand, 17749 - 17704
Alignment:
Q  323 gagaggggatacaacataaatggatacaatacacacgatttacatg 368  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  17749 gagaggggatacaacataaatggatacagtacacacgatttacatg 17704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 18389 - 18361
Alignment:
Q  91 aatatatttttgtacttttgacacaagat 119  Q
    |||||||||||||||||||||||||||||    
T  18389 aatatatttttgtacttttgacacaagat 18361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 11191 - 11146
Alignment:
Q  121 atgtagcaacctagtaagtagacaccacctgatatgacataaaaga 166  Q
    ||||||||| |||||||||||||||||| || ||||||| ||||||    
T  11191 atgtagcaaactagtaagtagacaccacatggtatgacacaaaaga 11146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 11971279 - 11971234
Alignment:
Q  121 atgtagcaacctagtaagtagacaccacctgatatgacataaaaga 166  Q
    ||||||||| |||||||||||||||||| || ||||||| ||||||    
T  11971279 atgtagcaaactagtaagtagacaccacatggtatgacacaaaaga 11971234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University