View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11892_low_2 (Length: 790)

Name: NF11892_low_2
Description: NF11892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11892_low_2
NF11892_low_2
[»] chr4 (2 HSPs)
chr4 (76-786)||(32164486-32165196)
chr4 (16-85)||(32164254-32164323)


Alignment Details
Target: chr4 (Bit Score: 659; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 659; E-Value: 0
Query Start/End: Original strand, 76 - 786
Target Start/End: Complemental strand, 32165196 - 32164486
Alignment:
Q  76 ttttgtagaaagtagtgtatgctgagaatgaccattctgcaaccaacatttccccgttttaaagacaggcccaaatcaaagataccattagcactagcat 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32165196 ttttgtagaaagtagtgtatgctgagaatgaccattctgcaaccaacatttccccgttttaaagacaggcccaaatcaaagataccattagcactagcat 32165097  T
Q  176 tcaaatatcaatctactttcagctttgcatctggataaagttatacacagatcacacacaaatttgctaagatctgtggcgcagaaaaactaacccacat 275  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  32165096 tcacatatcaatctactttcagctttgcatctggataaagttatacacagatcacacacaaatttgctaagatctgtggagcagaaaaattaacccacat 32164997  T
Q  276 gaaaattggattataacattatctttctcttcgccttagaatcgttctatccctcatctcttccataatcaccctaacacagaatatgtccatgttgcca 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32164996 gaaaattggattataacattatctttctcttcgccttagaatcgttctatccctcatctcttccataatcaccctaacacagattatgtccatgttgcca 32164897  T
Q  376 ctgttctcttacgagtccatcattaatacgtttctttatattaagtaaactcttagagtcaagtcttcaagtcgagtatatgaaagctcaatgagttatt 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32164896 ctgttctcttacgagtccatcattaatacgtttctttatattaagtaaactcttagagtcaagtcttcaagtcgagtatatgaaagctcaatgagttatt 32164797  T
Q  476 attgactctcgagctagacaatcttgcttctaccacaaggccatttactaactctgctgatcttttggtcactttacctcctcggacccatcagctcctg 575  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  32164796 attgactctcgagctagacaatcttgcttctactacaaggccatttactaactctgctgatcttttggtcactttacctcctcgaacccatcagcttctg 32164697  T
Q  576 ccaagctcttcgattcttatgcctgaacggttatctccagctttacaagactcaatttcagaacatgcacatctgcggtagggtgattataaaaccagtc 675  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  32164696 ccaagctcttcgaatcttatgcctgaacggttatctccagctttacaagactcattttcagaacatgcacatctccggtagggtgattataaaaccagtc 32164597  T
Q  676 cagctgcttgttaagaaggtaatttttctttatgatcacacacgatcatgaaaaaagtagatatgatcaaactgccacattgacatgtgtagtattgttg 775  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  32164596 cagctgcttgttaagaaggtaatttttctttatgatcacacacgatcatgagcaaagtagatatgatcaaactgccacattgacatgtgtagtattgttg 32164497  T
Q  776 atgtccatctc 786  Q
    | |||||||||    
T  32164496 acgtccatctc 32164486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 32164254 - 32164323
Alignment:
Q  16 acctggtgttggtgtgtttggagcttttctccatggttgtggacttcattccaattttgattttgtagaa 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32164254 acctggtgttggtgtgtttggagcttttctccatggttgtggacttcattccaattttgattttggagaa 32164323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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