View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11892_low_20 (Length: 367)
Name: NF11892_low_20
Description: NF11892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11892_low_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 41697188 - 41697538
Alignment:
| Q |
18 |
tgtgtgtgtgggataaaacaagacttgtattttctgaaaaacttacctgattaatatgtaggtgacgatacatgtttgcatggaagaaaggtgtttctcc |
117 |
Q |
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| T |
41697188 |
tgtgtgtgggggataaaacaagacttgtattttctgaaaaacttacctgattaatatgtaggtgacggtacatgtttgcatggaagaaaggcgtttctcc |
41697287 |
T |
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| Q |
118 |
aacctcgtgaattgaaattcgctttttggatgcagtttcaacattaacaatcctacgagtacttatttcaattaggttataagaatgccccactgaaatt |
217 |
Q |
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| T |
41697288 |
aacctcgtgaattgaaattcgctttttggatgcagtttcaacattaacaatcctacgagtacttatttcaattaggttataagaatgccccactgaaatt |
41697387 |
T |
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| Q |
218 |
tctgatgaacgaatcctctgtcaaaacaagagcataacatattataaacattaaattcataagagttcattaaaattt-aaaaaatgcaaaggctctaaa |
316 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41697388 |
tctgatgaacgaatcctctgttaaaacaagagcataacatattataaacattaaattcataagagttcattaaaatttaaaaaaatgcaaaggctctaaa |
41697487 |
T |
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| Q |
317 |
atcaaacatttatagcatcgtcaatgccagtggcttcaagaatgcctcgcg |
367 |
Q |
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| T |
41697488 |
atcaaacatttatagcatcgtcaatgccagtggcttcaagaatgcctcgcg |
41697538 |
T |
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