View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11892_low_24 (Length: 342)
Name: NF11892_low_24
Description: NF11892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11892_low_24 |
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| [»] chr2 (3 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 75 - 342
Target Start/End: Original strand, 1036086 - 1036353
Alignment:
| Q |
75 |
cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaatgacaatcctcgctacttgaaatct |
174 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1036086 |
cacaactgtgacagctgtaaataattgttatttatctgataattgttcggaatatgtcttcacatttctgatcaatgacaatcctcgctacttgaaatct |
1036185 |
T |
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| Q |
175 |
ctctcaaccgtctccaaacagtttctctcagtcacctacactcttcgattctctctaactatcctctatcaaacttgcactttcctccctcgtctattcc |
274 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1036186 |
ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaactatcctctatcaaacttgcactttcctccctcgtctcttcc |
1036285 |
T |
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| Q |
275 |
aaaggttcaccaacgttacctaccttgatcttagttcctacaacggtgacctcaacgcgcttctctgc |
342 |
Q |
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| T |
1036286 |
aaaggttcaccaacattacctaccttgatcttagttcctacaacggtgacctcaacgcgcttctctgc |
1036353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 217 - 340
Target Start/End: Original strand, 1036422 - 1036545
Alignment:
| Q |
217 |
cttcgattctctctaactatcctctatcaaacttgcactttcctccctcgtctattccaaaggttcaccaacgttacctaccttgatcttagttcctaca |
316 |
Q |
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| T |
1036422 |
cttcgattctctctaactatcctctatcaaacttgcactttcctccctcgtctcttccaaaggttcaccaacattacctaccttgatcttagttcctaca |
1036521 |
T |
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| Q |
317 |
acggtgacctcaacgcgcttctct |
340 |
Q |
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| T |
1036522 |
acggtgacctcaacgcgcttctct |
1036545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 44575173 - 44575222
Alignment:
| Q |
161 |
gctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcacc |
210 |
Q |
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| T |
44575173 |
gctacttgaagtctctctccatcgtctcaaaacagtttctctcaatcacc |
44575222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 75 - 342
Target Start/End: Original strand, 55907344 - 55907611
Alignment:
| Q |
75 |
cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaatgacaatcctcgctacttgaaatct |
174 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
55907344 |
cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgacaatcctcgctacttgaaatct |
55907443 |
T |
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| Q |
175 |
ctctcaaccgtctccaaacagtttctctcagtcacctacactcttcgattctctctaactatcctctatcaaacttgcactttcctccctcgtctattcc |
274 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
55907444 |
ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaattatcctctatcaaacttgcactttcctccctcgtctcttcc |
55907543 |
T |
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| Q |
275 |
aaaggttcaccaacgttacctaccttgatcttagttcctacaacggtgacctcaacgcgcttctctgc |
342 |
Q |
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| T |
55907544 |
aaaggttcacctacattacctaccttgatcttagttcctacaacggtgacctcaacgcacttctctgc |
55907611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 55907273 - 55907302
Alignment:
| Q |
7 |
acaatgaggttgagtaaactggttgctttc |
36 |
Q |
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| T |
55907273 |
acaatgaggttgagtaaactggttgctttc |
55907302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 41900247 - 41900315
Alignment:
| Q |
162 |
ctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcacctacactcttcgattctctct |
230 |
Q |
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| T |
41900247 |
ctacttgaaatctctctcactcgtctccaaacagtttctctccatcaccaacactcttcgattctctct |
41900315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 6403901 - 6403858
Alignment:
| Q |
160 |
cgctacttgaaatctctctcaaccgtctccaaacagtttctctc |
203 |
Q |
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| T |
6403901 |
cgctacttgaaatctctctcagccgtatccaaacagttcctctc |
6403858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 513428 - 513493
Alignment:
| Q |
165 |
cttgaaatctctctcaaccgtctccaaacagtttctctcagtcacctacactcttcgattctctct |
230 |
Q |
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| T |
513428 |
cttgaaatctctctccgccgtctcaaaacagttactctccatcaccaacaatctccgattctctct |
513493 |
T |
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