View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11892_low_25 (Length: 340)
Name: NF11892_low_25
Description: NF11892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11892_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 322
Target Start/End: Original strand, 37513803 - 37514117
Alignment:
| Q |
8 |
cagcacagacatttcaaatcgaatgcatgtccgatatccgacacacaaggttacattcaattactcctattttcaaattcaaatcattcgctaagactca |
107 |
Q |
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| T |
37513803 |
cagcacaaacatttcaaatcgaatgcatgtccgatatccgacacacaaggttacattcaattactcctattttcaaattcaaatcattcgctaagactca |
37513902 |
T |
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| Q |
108 |
tttaaaaaaggtatgataacacacgaaccggggattttggaaagatatcagcaagaagttttctgtaacgtttgactggttgtcttgatcttgacctcaa |
207 |
Q |
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| T |
37513903 |
tttaaaaaaggtatgataacacacgaaccggggattttggaaagatatcagcaagaagttttctgtaacgtttgactggttgtcttgatcttgacctcaa |
37514002 |
T |
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| Q |
208 |
agcaggacagcaaacacacatgctctcacaagctgggaagatcttccttgagatgacccccattttctacacaattcccaaatgagacaacaaaaaatgt |
307 |
Q |
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| T |
37514003 |
agcaggacagcaaacacacatgctctcacaagctgggaagatcttccttgagatgacccccattttctacacaattcccaaatgagacaacaaaaaatgt |
37514102 |
T |
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| Q |
308 |
agccaaattagttca |
322 |
Q |
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| T |
37514103 |
agccaaattagttca |
37514117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 36842297 - 36842044
Alignment:
| Q |
8 |
cagcacagacatttcaaatcgaatgcatgtccgatatccgacacacaaggttacattcaattactcctattttcaaattcaaatcattcgctaagactca |
107 |
Q |
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||||||| |||||||||||||||||||||||| || | |||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
36842297 |
cagcacaaacatttcaaatcgaatgcatgtccaatgtgcgacacacgtggttacattcaattactcctattttcaaatttaaatcattcgctaaaactca |
36842198 |
T |
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| Q |
108 |
tttaaaaaaggtatgataacacacgaaccggggattttggaaagatatcagcaagaagttttctgtaacgtttgactggttgtcttgatcttgacctcaa |
207 |
Q |
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|| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
36842197 |
ttaaaaaaaggtatgataacacatgaaccggggattttggaaaaatatcagcaagaagttttctgtaacatttgactggctgtcttgatcttgacctcaa |
36842098 |
T |
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| Q |
208 |
agcaggac-agcaaacacacatgctctcacaagctgggaagatcttccttgaga |
260 |
Q |
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| T |
36842097 |
agcaggacaagtaaacacacatgctctcacaagctgggaagatattccttgaga |
36842044 |
T |
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