View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11892_low_26 (Length: 335)
Name: NF11892_low_26
Description: NF11892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11892_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 7 - 281
Target Start/End: Original strand, 36993317 - 36993591
Alignment:
| Q |
7 |
taaacgaacatccttggggtgattttcccttcactggttttgtagctatgtgcaccgctatggggactcttatggttgatacttatgccaccgcttattt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36993317 |
taaacgaacatccttggggtgattttcccttcactggttttgtagctatgtgcaccgctatggggactcttatggttgatacttatgcaaccgcttattt |
36993416 |
T |
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| Q |
107 |
tcagaaccattattctaaaagggcaccggcacaggttgaaagtcagacaaccccagacgtggagaatgaagaacatacacatgttcatgctcacgcatca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36993417 |
tcagaaccattattctaaaagggcaccggcacaggttgaaagtcagacaaccccagacgtggagaatgaagaacatacacatgttcatgctcacgcatca |
36993516 |
T |
|
| Q |
207 |
catagtcatgcacatggtcatatttctttcgatcagtcatcagaacttcttcgtcatagggtcatatcacaggta |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36993517 |
catagtcatgcacatggtcatatttctttcgatcagtcatcagaacttcttcgtcatagggtcatatcacaggta |
36993591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 7 - 281
Target Start/End: Original strand, 37018757 - 37019031
Alignment:
| Q |
7 |
taaacgaacatccttggggtgattttcccttcactggttttgtagctatgtgcaccgctatggggactcttatggttgatacttatgccaccgcttattt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37018757 |
taaacgaacatccttggggtgattttcccttcactggttttgtagctatgtgcaccgctatggggactcttatggttgatacttatgcaaccgcttattt |
37018856 |
T |
|
| Q |
107 |
tcagaaccattattctaaaagggcaccggcacaggttgaaagtcagacaaccccagacgtggagaatgaagaacatacacatgttcatgctcacgcatca |
206 |
Q |
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| T |
37018857 |
tcagaaccattattctaaaagggcaccggcacaggttgaaagtcagacaaccccagacgtggagaatgaagaacatacacatgttcatgctcacgcatca |
37018956 |
T |
|
| Q |
207 |
catagtcatgcacatggtcatatttctttcgatcagtcatcagaacttcttcgtcatagggtcatatcacaggta |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37018957 |
catagtcatgcacatggtcatatttctttcgatcagtcatcagaacttcttcgtcatagggtcatatcacaggta |
37019031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 13 - 172
Target Start/End: Original strand, 36938930 - 36939089
Alignment:
| Q |
13 |
aacatccttggggtgattttcccttcactggttttgtagctatgtgcaccgctatggggactcttatggttgatacttatgccaccgcttattttcagaa |
112 |
Q |
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|
|||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
36938930 |
aacatccttggggtgattttccattcactggttttgtggctatgtgcactgctatggggactcttatggttgatacttatgccactgcttattttcaaaa |
36939029 |
T |
|
| Q |
113 |
ccattattctaaaagggcaccggcacaggttgaaagtcagacaaccccagacgtggagaa |
172 |
Q |
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||||||||| |||| |||||| ||||||||||||| | || | ||||||| |||||||| |
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| T |
36939030 |
ccattattccaaaaaggcaccagcacaggttgaaaatgaggtatccccagatgtggagaa |
36939089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 36955636 - 36955760
Alignment:
| Q |
7 |
taaacgaacatccttggggtgattttcccttcactggttttgtagctatgtgcaccgctatggggactcttatggttgatacttatgccaccgcttattt |
106 |
Q |
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|||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
36955636 |
taaaggaacatccttggggtgattttccattcaccggttttgtggctatgtgcactgctatggggtctctcatggttgatacttatgccaccgcttattt |
36955735 |
T |
|
| Q |
107 |
tcagaaccattattctaaaagggca |
131 |
Q |
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|||||| | | ||||||||| |||| |
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| T |
36955736 |
tcagaatcgtcattctaaaaaggca |
36955760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 186 - 281
Target Start/End: Original strand, 36955839 - 36955934
Alignment:
| Q |
186 |
catgttcatgctcacgcatcacatagtcatgcacatggtcatatttctttcgatcagtcatcagaacttcttcgtcatagggtcatatcacaggta |
281 |
Q |
| |
|
||||||||| |||| ||||| ||| ||||||||||||| ||| |||||| ||||| ||| ||||||||||||||||||||||||||||| |||||| |
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| T |
36955839 |
catgttcatactcatgcatcccatggtcatgcacatggccatgtttcttccgatccgtcttcagaacttcttcgtcatagggtcatatcgcaggta |
36955934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 36951148 - 36951228
Alignment:
| Q |
7 |
taaacgaacatccttggggtgattttcccttcactggttttgtagctatgtgcaccgctatggggactcttatggttgata |
87 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||| || ||||||| |||||||||||||| |
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| T |
36951148 |
taaaggaacatccttggggtgattttccattcaccggttttgtggctatgtgcactgccatggggattcttatggttgata |
36951228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 318
Target Start/End: Original strand, 36993612 - 36993649
Alignment:
| Q |
281 |
atataaagatatttgtgcatgagatatgaatatgattt |
318 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
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| T |
36993612 |
atataaagatatttgtgcatgagatgtgaatatgattt |
36993649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 318
Target Start/End: Original strand, 37019052 - 37019089
Alignment:
| Q |
281 |
atataaagatatttgtgcatgagatatgaatatgattt |
318 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
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| T |
37019052 |
atataaagatatttgtgcatgagatgtgaatatgattt |
37019089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 36951334 - 36951292
Alignment:
| Q |
7 |
taaacgaacatccttggggtgattttcccttcactggttttgt |
49 |
Q |
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|||| ||||||||||||||||||||||| ||||| |||||||| |
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| T |
36951334 |
taaaggaacatccttggggtgattttccattcaccggttttgt |
36951292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 36939174 - 36939215
Alignment:
| Q |
242 |
gtcatcagaacttcttcgtcatagggtcatatcacaggtata |
283 |
Q |
| |
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|||| ||||||||||||| |||||||||||| |||||||||| |
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|
| T |
36939174 |
gtcaacagaacttcttcgccatagggtcataacacaggtata |
36939215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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