View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11892_low_3 (Length: 712)

Name: NF11892_low_3
Description: NF11892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11892_low_3
NF11892_low_3
[»] chr5 (4 HSPs)
chr5 (178-658)||(31960965-31961457)
chr5 (47-118)||(11999770-11999841)
chr5 (61-124)||(9617999-9618062)
chr5 (624-694)||(31960887-31960960)
[»] chr8 (6 HSPs)
chr8 (33-178)||(8750021-8750166)
chr8 (33-177)||(24963054-24963198)
chr8 (33-177)||(38112485-38112629)
chr8 (56-177)||(41648542-41648661)
chr8 (64-158)||(42787411-42787506)
chr8 (79-124)||(3776344-3776389)
[»] chr7 (2 HSPs)
chr7 (33-177)||(40404099-40404243)
chr7 (77-124)||(43353791-43353838)
[»] chr1 (4 HSPs)
chr1 (61-124)||(5829968-5830031)
chr1 (61-124)||(42434144-42434207)
chr1 (79-138)||(29300648-29300707)
chr1 (79-124)||(30961245-30961290)
[»] chr3 (1 HSPs)
chr3 (84-124)||(30129803-30129843)
[»] chr2 (1 HSPs)
chr2 (84-124)||(6310243-6310283)
[»] chr4 (3 HSPs)
chr4 (77-124)||(1034505-1034552)
chr4 (79-124)||(19876973-19877018)
chr4 (79-124)||(49822294-49822339)
[»] chr6 (2 HSPs)
chr6 (78-124)||(4120779-4120825)
chr6 (79-124)||(748159-748204)


Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 178 - 658
Target Start/End: Complemental strand, 31961457 - 31960965
Alignment:
Q  178 aagaaaaaggattagctcaagtagacatgatcatcttaagttttcatattccannnnnnngttcaaattgagagtaatgacacttcgatttcaccatgat 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||| |||||||||||||||||||||||||||||    
T  31961457 aagaaaaaggattagctcaagtagacatgatcatcttaagttttcatattccatttttttgttcaaattgtgagtaatgacacttcgatttcaccatgat 31961358  T
Q  278 tttttcataacctacacaatttagattttctaannnnnnnnctttagtatttttaggataattgtgtagacacatttggaagttagattctagataggaa 377  Q
    |||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  31961357 tttttcataacctacacaatttagattttctaattttttt-ctttagtatttttaggataattgtgtagacacaattggaagttagattctcgataggaa 31961259  T
Q  378 atcacaaggcatctattatttgatatgagnnnnnnnntggcaatagaaggagagaatgagagaaaaacatgatttctttattttgtttagattagaagta 477  Q
    ||||||| |||||||||||||||||||||        ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31961258 atcacaaagcatctattatttgatatgagaaaaaaa-tggcaatagtaggagagaatgagagaaaaacatgatttctttattttgtttagattagaagta 31961160  T
Q  478 aaacggaaagtaaaacttgcttatggggagtcatactgtttttggaacaaatagaaccatattatacataagctcgaatgctcaagttaaaattgtgtag 577  Q
    ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31961159 aaaaggaaagtaaaacttgcttatggggagtcatattgtttttggaacaaatagaaccatattatacataagctcgaatgctcaagttaaaattgtgtag 31961060  T
Q  578 ac--------------ttttannnnnnnaatcgagtattatctgtgttcaactgcagaggttaatctattgagttggataagacctctaagaatg 658  Q
    ||              |||||       ||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||    
T  31961059 acttttttttatttttttttattttttaaatcgagtattatctgtgtccaactgcagaggttaatttattgagttgggtaaggcctctaagaatg 31960965  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 118
Target Start/End: Complemental strand, 11999841 - 11999770
Alignment:
Q  47 tgaggttaaagataggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatg 118  Q
    |||||| |||||  || ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||    
T  11999841 tgaggtcaaagacgggggaaggaagagagagtgaatagacaaaattaccctcaatgtaattaattaaaaatg 11999770  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 124
Target Start/End: Complemental strand, 9618062 - 9617999
Alignment:
Q  61 ggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacat 124  Q
    ||||||||||||||| | |||| |||| |||||||||||||| ||||||| |||||||||||||    
T  9618062 ggtgaaggaagagagttggaatagacagaattacccttaatgaaattaataaaaaatgccacat 9617999  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 624 - 694
Target Start/End: Complemental strand, 31960960 - 31960887
Alignment:
Q  624 ttaatctattgagttggataagacctctaagaatga-aaaagctctctc--aagagaattgaacacccctacat 694  Q
    ||||| ||||||||||| ||||  |||||||||||  ||||||||||||  |||||||||||||||||||||||    
T  31960960 ttaatttattgagttgggtaaggtctctaagaatggcaaaagctctctctcaagagaattgaacacccctacat 31960887  T

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Target: chr8 (Bit Score: 138; Significance: 9e-72; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 33 - 178
Target Start/End: Original strand, 8750021 - 8750166
Alignment:
Q  33 tgaagaaagtcgcgtgaggttaaagataggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacatggaagtgt 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8750021 tgaagaaagtcgcgtgaggttaaagataggtgaaggaagagagattgaatagacaaaattacccttaatgtaattaattaaaaatgccacatgggagtgt 8750120  T
Q  133 gtagaatggtgtgtgccaactatggaggtttgtgtatcatcactca 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8750121 gtagaatggtgtgtgccaactatggaggtttgtgtatcatcactca 8750166  T

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Target: chr8; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 33 - 177
Target Start/End: Complemental strand, 24963198 - 24963054
Alignment:
Q  33 tgaagaaagtcgcgtgaggttaaagataggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacatggaagtgt 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24963198 tgaagaaagtcgcgtgaggttaaagataggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacatgggagtgt 24963099  T
Q  133 gtagaatggtgtgtgccaactatggaggtttgtgtatcatcactc 177  Q
     ||||||||||||||||||||||||||||||||||||||||||||    
T  24963098 ttagaatggtgtgtgccaactatggaggtttgtgtatcatcactc 24963054  T

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Target: chr8; HSP #3
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 33 - 177
Target Start/End: Complemental strand, 38112629 - 38112485
Alignment:
Q  33 tgaagaaagtcgcgtgaggttaaagataggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacatggaagtgt 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  38112629 tgaagaaagtcgcgtgaggttaaagataggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacatgagagtgt 38112530  T
Q  133 gtagaatggtgtgtgccaactatggaggtttgtgtatcatcactc 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  38112529 gtagaatggtgtgtgccaactatggaggtttgtgtatcatcactc 38112485  T

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Target: chr8; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 56 - 177
Target Start/End: Original strand, 41648542 - 41648661
Alignment:
Q  56 agataggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacatggaagtgtgtagaatggtgtgtgccaactat 155  Q
    |||| |||||||||||||||  ||||||||||||||||||||||||  ||||| ||||||||||||||||| ||||||||||| | ||| |||||  |||    
T  41648542 agatgggtgaaggaagagag--tgaatggacaaaattacccttaataaaattatttaaaaatgccacatgggagtgtgtagaaggatgtatgccatgtat 41648639  T
Q  156 ggaggtttgtgtatcatcactc 177  Q
    ||| |||||| |||||||||||    
T  41648640 ggatgtttgtatatcatcactc 41648661  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 64 - 158
Target Start/End: Original strand, 42787411 - 42787506
Alignment:
Q  64 gaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacatggaa-gtgtgtagaatggtgtgtgccaactatgga 158  Q
    ||||||||||| | |||||||||||||||||| | ||| ||||||||||||||||||||||| || |||||||||| ||| | ||||| |||||||    
T  42787411 gaaggaagagaaagtgaatggacaaaattaccttcaatataattaattaaaaatgccacatgaaaggtgtgtagaagggtctatgccacctatgga 42787506  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 3776389 - 3776344
Alignment:
Q  79 gaatggacaaaattacccttaatgtaattaattaaaaatgccacat 124  Q
    |||| |||||||||||||||| || ||||||| |||||||||||||    
T  3776389 gaattgacaaaattacccttactgaaattaataaaaaatgccacat 3776344  T

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Target: chr7 (Bit Score: 137; Significance: 4e-71; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 33 - 177
Target Start/End: Original strand, 40404099 - 40404243
Alignment:
Q  33 tgaagaaagtcgcgtgaggttaaagataggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacatggaagtgt 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40404099 tgaagaaagtcgcgtgaggttaaagataggtgaaggaagagagattgaattgacaaaattacccttaatgtaattaattaaaaatgccacatgggagtgt 40404198  T
Q  133 gtagaatggtgtgtgccaactatggaggtttgtgtatcatcactc 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  40404199 gtagaatggtgtgtgccaactatggaggtttgtgtatcatcactc 40404243  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 43353838 - 43353791
Alignment:
Q  77 ttgaatggacaaaattacccttaatgtaattaattaaaaatgccacat 124  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||    
T  43353838 ttgaatggacaaaattacccttaaaaaaattaattaaaaatgccacat 43353791  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 124
Target Start/End: Complemental strand, 5830031 - 5829968
Alignment:
Q  61 ggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacat 124  Q
    ||||||||||||||| | |||| |||| |||||||||||||| ||||||| |||||||||||||    
T  5830031 ggtgaaggaagagagttggaatagacagaattacccttaatgaaattaataaaaaatgccacat 5829968  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 61 - 124
Target Start/End: Complemental strand, 42434207 - 42434144
Alignment:
Q  61 ggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacat 124  Q
    |||||||||||| ||   ||||||||||||||||||||| || ||||||| |||||||||||||    
T  42434207 ggtgaaggaagaaagtaggaatggacaaaattacccttactgaaattaataaaaaatgccacat 42434144  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 29300707 - 29300648
Alignment:
Q  79 gaatggacaaaattacccttaatgtaattaattaaaaatgccacatggaagtgtgtagaa 138  Q
    ||||||| |||| ||||||||||  ||||| |||||||||||||||||| | ||||||||    
T  29300707 gaatggataaaactacccttaataaaattatttaaaaatgccacatggaggggtgtagaa 29300648  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 30961290 - 30961245
Alignment:
Q  79 gaatggacaaaattacccttaatgtaattaattaaaaatgccacat 124  Q
    |||| ||||||||||||||| ||  |||||||||||||||||||||    
T  30961290 gaattgacaaaattacccttgataaaattaattaaaaatgccacat 30961245  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 30129803 - 30129843
Alignment:
Q  84 gacaaaattacccttaatgtaattaattaaaaatgccacat 124  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  30129803 gacaaaattacccttaataaaattaattaaaaatgccacat 30129843  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 6310243 - 6310283
Alignment:
Q  84 gacaaaattacccttaatgtaattaattaaaaatgccacat 124  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  6310243 gacaaaattacccttaataaaattaattaaaaatgccacat 6310283  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 1034552 - 1034505
Alignment:
Q  77 ttgaatggacaaaattacccttaatgtaattaattaaaaatgccacat 124  Q
    ||||||||||||||||||||||||   || ||||||||||||||||||    
T  1034552 ttgaatggacaaaattacccttaaaaaaaataattaaaaatgccacat 1034505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 19877018 - 19876973
Alignment:
Q  79 gaatggacaaaattacccttaatgtaattaattaaaaatgccacat 124  Q
    |||||||||||| || |||||||  |||||||||||||||||||||    
T  19877018 gaatggacaaaactatccttaataaaattaattaaaaatgccacat 19876973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 49822339 - 49822294
Alignment:
Q  79 gaatggacaaaattacccttaatgtaattaattaaaaatgccacat 124  Q
    |||||||||||| || |||||||  |||||||||||||||||||||    
T  49822339 gaatggacaaaactatccttaataaaattaattaaaaatgccacat 49822294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 4120825 - 4120779
Alignment:
Q  78 tgaatggacaaaattacccttaatgtaattaattaaaaatgccacat 124  Q
    ||||| ||||||||||||||||||| ||||||| |||||| ||||||    
T  4120825 tgaattgacaaaattacccttaatgaaattaataaaaaataccacat 4120779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 748159 - 748204
Alignment:
Q  79 gaatggacaaaattacccttaatgtaattaattaaaaatgccacat 124  Q
    |||| ||||||||||||||| ||  |||||||||||||||||||||    
T  748159 gaattgacaaaattacccttgataaaattaattaaaaatgccacat 748204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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