View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11892_low_35 (Length: 245)
Name: NF11892_low_35
Description: NF11892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11892_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 31951554 - 31951324
Alignment:
| Q |
1 |
aatgtaccattggctgtgatgatagcatctcaagctataattccactagacccacaatctaatagccctttactagtgcaaaaccatttgggtcgtgtta |
100 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
31951554 |
aatgtaccattgtctgtgatgatagcatctccagctataattccacttggcccacaatctaatagccctttactaatgcaaaaccatttgggttgtgttt |
31951455 |
T |
|
| Q |
101 |
cattatgagtatgcggcctttggggacaatgaagttgaaccgatcctgattgtaatacagaacagacacagataaaattgggccatctagctgaaatcaa |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31951454 |
cattctgagtatgcggcctttggggacaatgaagttgaaccgatcctgattgtaatacagaacagacacagagaaaattgggccatctagctgaaatcaa |
31951355 |
T |
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| Q |
201 |
aacaactataagtgtcagacacacaaatttt |
231 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
31951354 |
aacaactataagtgtcagacacacaaatttt |
31951324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 31951060 - 31951268
Alignment:
| Q |
15 |
tgtgatgatagcatctcaagctataattccactagacccacaatctaatagccctttactagtgcaaaaccatttgggtcgtgttacattatgagtatgc |
114 |
Q |
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| T |
31951060 |
tgtgatgatagcatctccagatataatcccacttggcccacaatctaatagccctttactagtgcaaaaccatttgggtcgtgttgccttcttagaagga |
31951159 |
T |
|
| Q |
115 |
ggcctttggggacaatgaagttgaaccgatcctgattgtaatacagaacagacacagataaaattgggccatctagctgaaatcaaaacaactataagtg |
214 |
Q |
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| T |
31951160 |
ggcctttgggaccaatgaagttgaaccaatcctgattataatacagaacagacacaaagaaaattgggtcatctagctgaaatcaaaacaactataagtg |
31951259 |
T |
|
| Q |
215 |
tcagacaca |
223 |
Q |
| |
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||||||||| |
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| T |
31951260 |
tcagacaca |
31951268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 2354627 - 2354428
Alignment:
| Q |
14 |
ctgtgatgatagcatctcaagctataattccactagacccacaatctaatagccctttactagtgcaaaaccatttgggtcgtgttacattatgagtatg |
113 |
Q |
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|||||||||||| | | | ||||||||| ||||| | | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
2354627 |
ctgtgatgatagaaccaccagctataataccacttggctcacaatctaatagccctttactagtgcaaaaccatttgggtcgtgttgcattatgagtaag |
2354528 |
T |
|
| Q |
114 |
cggcctttggggacaatgaagttgaaccgatcctgattgtaatacagaacagacacagataaaattgggccatctagctgaaatcaaaacaactataagt |
213 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
2354527 |
aggcctttggaaccaatgaagttgaaccgatcctgattgtaatacagaacagacacagagaaaattgggccatctagctgaaatcaaaacaattataagt |
2354428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 2354640 - 2354851
Alignment:
| Q |
15 |
tgtgatgatagcatctcaagctataattccactagacccacaatctaatagccctttactagtgcaaaaccatttgggtcgtgttacattatgagtatgc |
114 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||| | |
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| T |
2354640 |
tgtgatgatagcatctccagctataatcccacttggcccacaatctaatagccctttactagtgcaaaaccatttgggccgtgttgcattctgagtagga |
2354739 |
T |
|
| Q |
115 |
ggcctttggggacaatgaagttgaaccgatcctgattgtaatacagaacagacacagataaaattgggccatctagctgaaatcaaaacaactataagtg |
214 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| | || |||||||||||| || |||||||| |
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| T |
2354740 |
ggcctttcagaccaatgaagttgaaccgatcctgattgtaatacagaacagacacaaagaaaattgggccttttatctgaaatcaaaataattataagtg |
2354839 |
T |
|
| Q |
215 |
tcagacacacaa |
226 |
Q |
| |
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|||||||||||| |
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| T |
2354840 |
tcagacacacaa |
2354851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 35568252 - 35568328
Alignment:
| Q |
130 |
tgaagttgaaccgatcctgattgtaatacagaacagacacagataaaattgggccatctagctgaaatcaaaacaact |
207 |
Q |
| |
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||||||||||| || |||||| || ||||||||||| || | ||||||||||||||||||||||| ||||||||| |
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| T |
35568252 |
tgaagttgaactgagcctgatgagaacacagaacagacgcaaaggaaattgggccatctagctgaaat-aaaacaact |
35568328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 5 - 226
Target Start/End: Original strand, 3498585 - 3498806
Alignment:
| Q |
5 |
taccattggctgtgatgatagcatctcaagctataattccactagacccacaatctaatagccctttactagtgcaaaaccatttgggtcgtgttacatt |
104 |
Q |
| |
|
||||| || |||||||||||||||| ||||||||| ||||| | |||||| |||| |||||||||||||||||||||||||||||| ||||| |||| |
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| T |
3498585 |
taccactgtctgtgatgatagcatcagcagctataatcccacttggcccacattctattagccctttactagtgcaaaaccatttgggcggtgttgcatt |
3498684 |
T |
|
| Q |
105 |
atgagtatgcggcctttggggacaatgaagttgaaccgatcctgattgtaatacagaacagacacagataaaattgggccatctagctgaaatcaaaaca |
204 |
Q |
| |
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|||||| | |||||||||| ||||||||||||||| |||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
3498685 |
ctgagtaggaggcctttgggaccaatgaagttgaacctttcctgattgtgatacagaacagacacagagaaacttgggccatctagctgaaatcaaaaca |
3498784 |
T |
|
| Q |
205 |
actataagtgtcagacacacaa |
226 |
Q |
| |
|
||||||||||||| |||||||| |
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|
| T |
3498785 |
actataagtgtcaaacacacaa |
3498806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 3510742 - 3510959
Alignment:
| Q |
4 |
gtaccattggctgtgatgatagcatctcaagctataattccactagacccacaatctaatagccctttactagtgcaaaaccatttgggtcgtgttacat |
103 |
Q |
| |
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||||| ||| |||||||||||||||| | | |||||||||||| | ||| || | |||||||||||||||||||||||||||||| | ||||| ||| |
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| T |
3510742 |
gtaccgttgtctgtgatgatagcatcaccggttataattccacttggcccgcatgccaatagccctttactagtgcaaaaccatttgtgcagtgttgcat |
3510841 |
T |
|
| Q |
104 |
tatgagtatgcggcctttggggacaatgaagttgaaccgatcctgattgtaatacagaacagacacagataaaattgggccatctagctgaaatcaaaac |
203 |
Q |
| |
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| |||||| | |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3510842 |
tctgagtaggaggccattgggaccaatgaagttgaaccgatcctgattgtaatacagaacagacacag--aaaattgggccatctagctgaaatcaaaac |
3510939 |
T |
|
| Q |
204 |
aactataagtgtcagacaca |
223 |
Q |
| |
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|||||||| ||||||||||| |
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| T |
3510940 |
aactataattgtcagacaca |
3510959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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