View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11892_low_4 (Length: 634)

Name: NF11892_low_4
Description: NF11892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11892_low_4
NF11892_low_4
[»] chr1 (5 HSPs)
chr1 (155-616)||(26487405-26487861)
chr1 (154-616)||(44403583-44404039)
chr1 (1-79)||(26487932-26488010)
chr1 (1-50)||(26491281-26491330)
chr1 (1-50)||(26503718-26503767)
[»] chr2 (3 HSPs)
chr2 (189-547)||(4773493-4773852)
chr2 (167-444)||(2465539-2465816)
chr2 (400-552)||(36353765-36353915)
[»] chr3 (5 HSPs)
chr3 (154-448)||(2904043-2904337)
chr3 (223-496)||(50654488-50654769)
chr3 (487-547)||(2904339-2904398)
chr3 (324-501)||(41171152-41171329)
chr3 (401-470)||(19145523-19145592)
[»] chr5 (3 HSPs)
chr5 (350-462)||(2147909-2148022)
chr5 (156-317)||(2147684-2147845)
chr5 (404-558)||(16970170-16970324)
[»] chr7 (2 HSPs)
chr7 (411-547)||(47397018-47397154)
chr7 (413-519)||(38159560-38159666)
[»] chr4 (1 HSPs)
chr4 (397-468)||(34760249-34760320)
[»] chr8 (1 HSPs)
chr8 (407-468)||(9811907-9811968)


Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 155 - 616
Target Start/End: Complemental strand, 26487861 - 26487405
Alignment:
Q  155 taggtccttgggaaggacacacctaaggcatcgtccattaaagcaaatgataaataaaagggagatttattgaccttgacaagatgttatgaaccattag 254  Q
    |||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| ||||||| ||||||||| ||||||||||||||    
T  26487861 taggtctttgggaaggacacacctaaggtatcgtccattaaaacaaatgataaataagagggagattcattgaccgtgacaagatattatgaaccattag 26487762  T
Q  255 ctcccaacttagcgagaacgtctgcacatgaatttccttctcgaaggatatggtaaatagtaactgtcaaatccttagcaaggtagttcccgataagttt 354  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26487761 -tcccaacttagcgagaacgtctgcacatgaatttccttctcgaaggatatggtaaatagtaactgtcaaatccttagcaaggtagtttccgataagttt 26487663  T
Q  355 caagatatttgcataatgatggaaacgtggcgtgtccgtcgacaccaattgcaccacatgaagagagtcagagtaacacataagttttttatagcctgcc 454  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26487662 caagatatttgcataatgatggaaacgtggtgtgtccgtcgacaccaattgcaccacatgaagagagtcagagtaacacataagttttttatagcctgcc 26487563  T
Q  455 tcccaacacaacttgattccaatccagagagcttgaatctcagcatgaaggatattagaaatccccacacttccgaaaaaaccaagttgaaaattgtcgt 554  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||| |||||| |||    
T  26487562 tcccaacacaacttaattccaatccagagagcttgaatctcagcatgaaggatattaaagatccccacactttcgaaaaaaccaagttggaaattgccgt 26487463  T
Q  555 catgcttgctaattaattagaccaccataacccgcttttcctagatttgccaaagcacttcc 616  Q
    | |||||    | |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26487462 cgtgctt----actaattagaccaccataacccacttttcctagatttgccaaagcacttcc 26487405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 154 - 616
Target Start/End: Original strand, 44403583 - 44404039
Alignment:
Q  154 ctaggtccttgggaaggacacacctaaggcatcgtccattaaagcaaatgataaataaaagggagatttattgaccttgacaagatgttatgaaccatta 253  Q
    ||||||| |||| ||||| ||| |||||||||||  ||||||| |||||||||||||  |||||| || ||| ||| ||| |||||| | | ||| ||||    
T  44403583 ctaggtcattggaaaggatacatctaaggcatcggtcattaaaacaaatgataaataggagggaggttcattaaccatgataagatggtctaaactatta 44403682  T
Q  254 gctcccaacttagcgagaacgtctgcacatgaatttccttctcgaaggatatggtaaatagtaactgtcaaatccttagcaaggtagttcccgataagtt 353  Q
    ||| || |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| | || ||||||||||||| ||||| | ||| ||||    
T  44403683 gcttcccacttagcgagaacgtctgcacatgaatttcgttctcgaag-atatggtaaatagtaatt-tccaatccttagcaagatagtttcggatgagtt 44403780  T
Q  354 tcaagatatttgcataatgatggaaacgtggcgtgtccgtcgacaccaattgcaccacatgaagagagtcagagtaacacataagttttttatagcctgc 453  Q
    |||||||||||||||  |||||||||| ||| || ||| | |||||||||| ||||||||||||||||||| |||| |||||||||||||||||| ||||    
T  44403781 tcaagatatttgcatggtgatggaaacctggagtatcctttgacaccaattacaccacatgaagagagtcatagtagcacataagttttttatagtctgc 44403880  T
Q  454 ctcccaacacaacttgattccaatccagagagcttgaatctc-agcatgaaggatattagaaatccccacacttccgaaaaaaccaagttgaaaattgtc 552  Q
    |||||||||||| ||||||||||||||||||||| |||||||  ||||||||||||||||| ||||||| | || ||||||||||||||||||| ||| |    
T  44403881 ctcccaacacaatttgattccaatccagagagctagaatctctggcatgaaggatattagagatccccata-tttcgaaaaaaccaagttgaaagttgcc 44403979  T
Q  553 gtcatgcttgctaattaattagaccaccataacccgcttttcctagatttgccaaagcacttcc 616  Q
     || |||||    | ||||||||||||||| |||||||||| ||  ||||| ||||||||||||    
T  44403980 atcgtgctt----actaattagaccaccatcacccgctttttctgaatttgtcaaagcacttcc 44404039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 26488010 - 26487932
Alignment:
Q  1 aaagtaagcaccacctcttcatgaacccaaaccaaatttgcgacaaatttttatgttcatccaaatctacatgcaatga 79  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26488010 aaagtaagcaccacctcttcatgaacccaaaccaaatttgcgagaaatttttatgttcatccaaatctacatgcaatga 26487932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 26491330 - 26491281
Alignment:
Q  1 aaagtaagcaccacctcttcatgaacccaaaccaaatttgcgacaaattt 50  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  26491330 aaagtaagcaccacctcttcatgaacccaaaccaaatttgcaagaaattt 26491281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 26503767 - 26503718
Alignment:
Q  1 aaagtaagcaccacctcttcatgaacccaaaccaaatttgcgacaaattt 50  Q
    ||||||| ||| ||||||||||| |||||||||||||| |||| ||||||    
T  26503767 aaagtaaacactacctcttcatgcacccaaaccaaattcgcgagaaattt 26503718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 189 - 547
Target Start/End: Complemental strand, 4773852 - 4773493
Alignment:
Q  189 ccattaaagcaaatgataaataaaagggagatttattgaccttgacaagatgttatgaaccattagctcccaacttagcgagaacgtctgcacatgaatt 288  Q
    ||||||||||  | |||||| || |||| | || ||||||  ||| || ||| ||||||| || | ||||||||||||  ||||||||||||||||||||    
T  4773852 ccattaaagcggaagataaacaagaggggggttcattgactgtgataaaatggtatgaactatcaactcccaacttaggaagaacgtctgcacatgaatt 4773753  T
Q  289 tccttctcgaaggatatggtaaatagtaactgtcaaatccttagcaaggtagttcccgataagtttcaagatatttgcataatgatggaaacgtggcgtg 388  Q
    |||||||| ||||||||||| ||||||||| ||| ||||||||||||| ||||| | ||  | ||  |||||||||||||  ||||||||||| |  |||    
T  4773752 tccttctcaaaggatatggtgaatagtaaccgtccaatccttagcaagatagtttcagaggaattctaagatatttgcatggtgatggaaacgagaagtg 4773653  T
Q  389 tccgtcgacaccaattgcaccacatgaagagagtcagagtaacacataagttttttatagcctgcctcccaacacaacttgattccaatccagagagctt 488  Q
    | | |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||    
T  4773652 ttcttcgacaccaattgccccacatgaagagagttagagtaacacataagttttttatagccgacctcccaacacaacttgattccaatctagagagctt 4773553  T
Q  489 gaatctcagcatgaaggatattagaaatccccacacttccg-aaaaaaccaagttgaaaa 547  Q
    ||||||||| | || |||||||||| |||| ||||||| || |||||||||| |||||||    
T  4773552 gaatctcagtaggatggatattagagatcctcacactttcgaaaaaaaccaaattgaaaa 4773493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 167 - 444
Target Start/End: Original strand, 2465539 - 2465816
Alignment:
Q  167 aaggacacacctaaggcatcgtccattaaagcaaatgataaataaaagggagatttattgaccttgacaagatgttatgaaccattagctcccaacttag 266  Q
    |||||||||||||||| |||   |||||||| | |||||||| || ||||||| | ||||||| |||||||||| ||||||| |||||||||||||||||    
T  2465539 aaggacacacctaaggtatcacgcattaaagtagatgataaacaagagggagactcattgaccatgacaagatggtatgaactattagctcccaacttag 2465638  T
Q  267 cgagaacgtctgcacatgaatttccttctcgaaggatatggtaaatagtaactgtcaaatccttagcaaggtagttcccgataagtttcaagatatttgc 366  Q
     |||||| ||||||||| ||||| |||||||| |||||||   || ||||| | || ||||||||||||  |||||   ||| |||| ||||||||||||    
T  2465639 tgagaacatctgcacataaattttcttctcgagggatatgagtaacagtaagtttccaatccttagcaaaatagttttggatgagttccaagatatttgc 2465738  T
Q  367 ataatgatggaaacgtggcgtgtccgtcgacaccaattgcaccacatgaagagagtcagagtaacacataagtttttt 444  Q
    ||| ||||||||| |||   | ||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  2465739 atagtgatggaaatgtgaaatctccttcgacaccaattacaccacatgaagatagtcagagtaacacataagtttttt 2465816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 400 - 552
Target Start/End: Original strand, 36353765 - 36353915
Alignment:
Q  400 caattgcaccacatgaagagagtcagagtaacacataagttttttatagcctgcctcccaacacaacttgattccaatccagagagcttgaatctcagca 499  Q
    ||||||||||||||||||||| ||| |||||||||  |||||| ||||| | ||||||||||||||||||||||||| | | ||||| | ||||||||||    
T  36353765 caattgcaccacatgaagagactcatagtaacaca--agttttctatagtccgcctcccaacacaacttgattccaaactaaagagcctaaatctcagca 36353862  T
Q  500 tgaaggatattagaaatccccacacttccgaaaaaaccaagttgaaaattgtc 552  Q
    |||||||||||||| |||||||| || || || ||| ||| ||||||| ||||    
T  36353863 tgaaggatattagagatccccactctaccaaagaaatcaaattgaaaactgtc 36353915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 5e-70; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 154 - 448
Target Start/End: Original strand, 2904043 - 2904337
Alignment:
Q  154 ctaggtccttgggaaggacacacctaaggcatcgtccattaaagcaaatgataaataaaagggagatttattgaccttgacaagatgttatgaaccatta 253  Q
    ||||||| || | |||||||||||||||||||| ||||||||||||||||||||||||  ||||     ||||||| ||| |||||| | ||||  ||||    
T  2904043 ctaggtctttagaaaggacacacctaaggcatcatccattaaagcaaatgataaataagggggaagcccattgaccgtgataagatggtctgaattatta 2904142  T
Q  254 gctcccaacttagcgagaacgtctgcacatgaatttccttctcgaaggatatggtaaatagtaactgtcaaatccttagcaaggtagttcccgataagtt 353  Q
    |||||||||||||||||||||| |||| |||||||||||||| ||||| |||||| | ||||||||||| ||||||||  ||| ||||||| ||| ||||    
T  2904143 gctcccaacttagcgagaacgtttgcatatgaatttccttcttgaagggtatggtgactagtaactgtccaatccttactaagatagttccagatgagtt 2904242  T
Q  354 tcaagatatttgcataatgatggaaacgtggcgtgtccgtcgacaccaattgcaccacatgaagagagtcagagtaacacataagttttttatag 448  Q
     ||||||||||||||| |||||||||||||  |||| | |||||||||| || |||| ||||||||||||| ||||||| |||||||||||||||    
T  2904243 ccaagatatttgcatagtgatggaaacgtgaagtgttcttcgacaccaaatgtaccatatgaagagagtcaaagtaacatataagttttttatag 2904337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 223 - 496
Target Start/End: Original strand, 50654488 - 50654769
Alignment:
Q  223 attgaccttgacaagatgttatgaaccattagctcccaacttagcgagaacgtctgcacatgaatttccttctcgaaggatatggtaaatagtaactgtc 322  Q
    ||||||| |||||||||| | ||||| | |||||| || |||||| ||||||||||||||||||||| ||||||| |||||||| | |||||||||||||    
T  50654488 attgaccgtgacaagatggtctgaactactagctctcagcttagcaagaacgtctgcacatgaattttcttctcgtaggatatgatgaatagtaactgtc 50654587  T
Q  323 aaatccttagcaaggtagttcccgataagtttcaagatatttgcataatgatggaaacgtggcgtgtccgtcgacaccaattgcaccacatgaagagagt 422  Q
     || ||| |||| | ||||||| ||| |||||||||||||||||||| |||||||||||||| | |||  |||||| |||||||| ||||||||||||||    
T  50654588 caaccctaagcaggatagttccggatgagtttcaagatatttgcatagtgatggaaacgtggagagtcattcgacatcaattgcatcacatgaagagagt 50654687  T
Q  423 cagagtaacacataag------ttttttatagcc--tgcctcccaacacaacttgattccaatccagagagcttgaatctca 496  Q
    |||||||||| |||||      ||||||||| ||  || ||||||||| |||||||||||||||||||||||||||| ||||    
T  50654688 cagagtaacaaataagttttttttttttatatcctgtgtctcccaacataacttgattccaatccagagagcttgaacctca 50654769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 487 - 547
Target Start/End: Original strand, 2904339 - 2904398
Alignment:
Q  487 ttgaatctcagcatgaaggatattagaaatccccacacttccgaaaaaaccaagttgaaaa 547  Q
    ||||||||||||| ||||||||||||| ||| ||||| || ||||||||||||||||||||    
T  2904339 ttgaatctcagcaagaaggatattagagatctccaca-tttcgaaaaaaccaagttgaaaa 2904398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 501
Target Start/End: Complemental strand, 41171329 - 41171152
Alignment:
Q  324 aatccttagcaaggtagttcccgataagtttcaagatatttgcataatgatggaaacgtggcg-tgtccgtcgacaccaattgcaccacatgaagagagt 422  Q
    ||||||||||||| || |||  ||| |||| ||||| ||||||||||||||| |||| | | | ||||  ||  |||||| || ||||||||||||||||    
T  41171329 aatccttagcaagataattctggatgagttccaagagatttgcataatgatg-aaacctcgagatgtctttcatcaccaactgtaccacatgaagagagt 41171231  T
Q  423 cagagtaacacataagttttttatagcctgcctcccaacacaacttgattccaatccagagagcttgaatctcagcatg 501  Q
    | ||| |||||||||| ||| |||| ||||  | |||||| ||||| || ||| || | |  |||||||||||||||||    
T  41171230 cggagaaacacataagctttctataacctgttttccaacataactttataccagtcaaaaacgcttgaatctcagcatg 41171152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 401 - 470
Target Start/End: Original strand, 19145523 - 19145592
Alignment:
Q  401 aattgcaccacatgaagagagtcagagtaacacataagttttttatagcctgcctcccaacacaacttga 470  Q
    |||||||||||||||| |||||| |  ||||||||||   ||||||||||  ||||||||||||||||||    
T  19145523 aattgcaccacatgaaaagagtcgggataacacataatcattttatagccaacctcccaacacaacttga 19145592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 350 - 462
Target Start/End: Original strand, 2147909 - 2148022
Alignment:
Q  350 agtttcaagatatttgcataatgatggaaacgtggcgtgtccgtcgacaccaattgcaccacatgaagagagtcagagtaacacataag-ttttttatag 448  Q
    |||||||| ||||||||||| |||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||    
T  2147909 agtttcaacatatttgcatagtgatggaaacgtggagtgtccttcgacaccaattgcatcacatgaagagagtcagagtaacacacaagtttttttatag 2148008  T
Q  449 cctgcctcccaaca 462  Q
    |||||| |||||||    
T  2148009 cctgccgcccaaca 2148022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 156 - 317
Target Start/End: Original strand, 2147684 - 2147845
Alignment:
Q  156 aggtccttgggaaggacacacctaaggcatcgtccattaaagcaaatgataaataaaagggagatttattgaccttgacaagatgttatgaaccattagc 255  Q
    |||||||| | || |||||||||||| ||||  ||||||||  |  ||||||||||  |||||| | ||||||| ||| | |||| | ||||| |||| |    
T  2147684 aggtccttagaaatgacacacctaagacatcacccattaaaagagctgataaataagggggagactcattgaccgtgataggatggtctgaactattaac 2147783  T
Q  256 tcccaacttagcgagaacgtctgcacatgaatttccttctcgaaggatatggtaaatagtaa 317  Q
    | ||||||||  ||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  2147784 taccaacttaaagagaacgtctgcacatgaaattccttctcgaaggatatggtgaatagtaa 2147845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 404 - 558
Target Start/End: Complemental strand, 16970324 - 16970170
Alignment:
Q  404 tgcaccacatgaagagagtcagagtaacacataagttttttatagcctgcctcccaacacaacttgattccaatccagagagcttgaatctcagcatgaa 503  Q
    ||||| ||||||||||||||||||||||| || || ||| |||| | ||| |||||||| || || || |   || | ||||||||||| |||||||| |    
T  16970324 tgcactacatgaagagagtcagagtaacatatgaggtttctatatcatgcatcccaacaaaaatttatactggtcaatagagcttgaatttcagcatgta 16970225  T
Q  504 ggatattagaaatccccacacttccgaaaaaaccaagttgaaaattgtcgtcatg 558  Q
    ||||||| || ||||| ||||| || || ||||||||||||||||| || |||||    
T  16970224 ggatatttgagatccctacactaccaaagaaaccaagttgaaaattttcatcatg 16970170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 411 - 547
Target Start/End: Original strand, 47397018 - 47397154
Alignment:
Q  411 catgaagagagtcagagtaacacataagttttttatagcctgcctcccaacacaacttgattccaatccagagagcttgaatctcagcatgaaggatatt 510  Q
    ||||||||||||| |||||||| || || ||| |||| ||||| |||||||||||||| |  | | || | ||||||||||| |||||||| ||||||||    
T  47397018 catgaagagagtcggagtaacatatgagctttctatatcctgcatcccaacacaactttacgctagtcaatagagcttgaatttcagcatgtaggatatt 47397117  T
Q  511 agaaatccccacacttccgaaaaaaccaagttgaaaa 547  Q
     || || || ||||| || || |||||||| ||||||    
T  47397118 tgagatacctacactaccaaagaaaccaagctgaaaa 47397154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 413 - 519
Target Start/End: Original strand, 38159560 - 38159666
Alignment:
Q  413 tgaagagagtcagagtaacacataagttttttatagcctgcctcccaacacaacttgattccaatccagagagcttgaatctcagcatgaaggatattag 512  Q
    |||||||||||  |||| || || || |||||||| ||||| ||||||||||| || || ||| || | ||||||||||| |||||||| | |||||| |    
T  38159560 tgaagagagtcgaagtagcatatgagctttttatatcctgcatcccaacacaattttataccagtcaatagagcttgaatttcagcatgtatgatatttg 38159659  T
Q  513 aaatccc 519  Q
    | |||||    
T  38159660 agatccc 38159666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 397 - 468
Target Start/End: Complemental strand, 34760320 - 34760249
Alignment:
Q  397 caccaattgcaccacatgaagagagtcagagtaacacataagttttttatagcctgcctcccaacacaactt 468  Q
    |||||| || ||||||||||||||||| ||| |||||||||| ||| ||||  ||||||||||||| |||||    
T  34760320 caccaactgtaccacatgaagagagtcggagaaacacataagctttctataatctgcctcccaacataactt 34760249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 468
Target Start/End: Original strand, 9811907 - 9811968
Alignment:
Q  407 accacatgaagagagtcagagtaacacataagttttttatagcctgcctcccaacacaactt 468  Q
    |||| ||||||||||||| || |||||||||||||| |||  ||||||| |||||| |||||    
T  9811907 accatatgaagagagtcaaagaaacacataagttttctatgacctgccttccaacataactt 9811968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University