View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11892_low_40 (Length: 216)
Name: NF11892_low_40
Description: NF11892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11892_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 40224213 - 40224412
Alignment:
| Q |
1 |
tggttttgatcttcaaatgacacactattggcaacacaacaaaatgtagtaaaatacatcacaaaacttaacatttgccttttcatattcactatccctc |
100 |
Q |
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| T |
40224213 |
tggttttgatcttcaaatgacacactattggcaacacaacaaaatgtagtaaaatacatcacaaaacttaacatttgccttttcatattcactatccctc |
40224312 |
T |
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| Q |
101 |
taagaaagaccactattctatgaaattcatttgtcaactgcattctcctttctcaatagaagtttcttttgtatgtttttgtttacccacttgtacatgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40224313 |
taagaaagaccactattctatgaaattcatttgtcaactgcattctcctttctcaatagaagtttcttttgtatgtttttgtttacccacttgtacatgc |
40224412 |
T |
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