View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11892_low_5 (Length: 583)
Name: NF11892_low_5
Description: NF11892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11892_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 18 - 573
Target Start/End: Complemental strand, 13627923 - 13627368
Alignment:
| Q |
18 |
gaaacttggccagttagagaagttagaatttgtttacctttaaccaagcatatataaattttcttacatgatttttgccaattttctgctgaagattaat |
117 |
Q |
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| T |
13627923 |
gaaacttggccagttagagaagttagaatttgtttacctttaaccaagcatatataaattttcttacatgattttttccaattttctactgaagattaat |
13627824 |
T |
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| Q |
118 |
tcttaaacctttgtctattttgtgcagtcaaaatgtgtaccctctttttatcacaagacatccacaagatcgctatcaatttgcaattggactatcagat |
217 |
Q |
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| T |
13627823 |
ccttaaacctttgtctattttgtgcagtcaaaatgtgtaccctctttttatcacaagacatccacaagatcgctatcaatttgcaattggactatcagat |
13627724 |
T |
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| Q |
218 |
gggtctgttacaattatggagcccaaaaagtatgaagcatggtggtggtaaaaaagtgtgtgttgttaaaatggatatggtgtgataattcatttgcatc |
317 |
Q |
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| T |
13627723 |
ggatctgttacaattatggagcccaaaaagtatgaagcatggtggtggtaaaaaagtgtttgttgttaaaatggatatggtgtgataattcatttgcatc |
13627624 |
T |
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| Q |
318 |
attttagnnnnnnnnnncaattattgagttgttaaacagttgttcaactttatggttggatannnnnnnattgtgagacaatgtttggatgctgttgaag |
417 |
Q |
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| T |
13627623 |
attttagttttttctttcaattattgagttgttaaacagttgttcaactttatggttggatgtttttttattgtgagacaatgtttggatgctcatgaag |
13627524 |
T |
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| Q |
418 |
atgttttggtcaagtaatctttatgcttaagtatggtatataaatacattatgtttgcatgaattattttatatattaaatgtgatatatttgaagtact |
517 |
Q |
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| T |
13627523 |
atgttttggtcaagtaatctttatgcttaagtatggtatataaatacattatatttgcatgaattattttatatattaaatgtgatagatttgaagtact |
13627424 |
T |
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| Q |
518 |
attctagtctaaattttgatcttctgatttttgaagtggcttaacttaaacctttg |
573 |
Q |
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| T |
13627423 |
attctagtctaaattttgatcttctgatttttgaagtggcttaacttaaacctttg |
13627368 |
T |
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