View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11892_low_6 (Length: 510)
Name: NF11892_low_6
Description: NF11892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11892_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 33271964 - 33272161
Alignment:
| Q |
14 |
gatgaacaaaa-ttctaaaccaaatactatatgnnnnnnncttgctacatataagcatatccataacaacatatcaaatcatcgaagttttggctcttnn |
112 |
Q |
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| T |
33271964 |
gatgaacaaaacttctaaaccaaatactatatgaaaaaaacttgctacatataagcatatccaaaacaacatatcaaatcatcgaagttttggctcttaa |
33272063 |
T |
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| Q |
113 |
nnnnntcataaaagtttgaatcaagtagatgatagggagattaattgattgacgaactaatttcagatgttagttcgtgacaaaaatggaaaaatgga |
210 |
Q |
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| T |
33272064 |
aaaaatcataaaagtttgaatcaagtagatgatagggagattaattgattgacgaactaatttcagatgttagttcgtgacaaaaatggaaaaatgga |
33272161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 247 - 441
Target Start/End: Original strand, 33272149 - 33272339
Alignment:
| Q |
247 |
atggaaaaatggaacataagttatgtagatctttgacgtaaacacannnnnnnncattctgaatacaatttatatttccaatcttgtatatttattttct |
346 |
Q |
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| T |
33272149 |
atggaaaaatggaacacaagttatgtagatctttgatgtaaacacattttttt-cattctgaatacaatttatatttccaatcttgtatatt----ttct |
33272243 |
T |
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| Q |
347 |
cggcaacattcaaggcaatgtacgttgcaccaccaacatacacacacattgttcttcaagaattaacgacaacatgatg-aagatcataggacaat |
441 |
Q |
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| T |
33272244 |
cggcaacattcaaggcaatgtacgttgcaccaccaacatacacacacattgttcttcaagaattaacgacaacatgacgaaaaatcataggacaat |
33272339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 439 - 491
Target Start/End: Original strand, 33272466 - 33272518
Alignment:
| Q |
439 |
aattggcaaataaaaatcaatattaataatggtgatatcaatgatcattttac |
491 |
Q |
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| T |
33272466 |
aattggcaaataaaaatcaatattaataatggtgatatcaatgatcattttac |
33272518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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