View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11892_low_8 (Length: 486)
Name: NF11892_low_8
Description: NF11892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11892_low_8 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 31951551 - 31952023
Alignment:
| Q |
1 |
cattgtatgtggccggtgtgcaagtttttaatccagctaccgttattgtatgtgaggtttctcctagacatggaaatggtctggaattttctcccaaaac |
100 |
Q |
| |
|
||||| ||||||||||||||| || ||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| || |
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|
| T |
31951551 |
cattgcatgtggccggtgtgcgagcttttaatccagctactgttattgtatgtgaggcttctcctggacatggaaatggtctggaattttctcccaagac |
31951650 |
T |
|
| Q |
101 |
aagtattacaacttcagcacctcttagcccacccaactagagtggttttgctcctttagctgcctttttgttcagcatatgtgagttctgaagttgcgcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
31951651 |
aagtattacaacttcagcacctcttagcccacccaactagagtggttttgctcctttagctgccattttgttcagcatatgtgagttctgaagttgcgcc |
31951750 |
T |
|
| Q |
201 |
cactacccagtgttgtggtgtagcaggggtagcctttgatctgatgtgtggtggttctgtgatagttgttttcgtagttgagggtatgtacataattcta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
31951751 |
cactacccagtgttgtggtgtagcaggggtagcctttgatctgatgtgtggtggttctgtgatagttgttttcgtagttgagggtatg-----aattcta |
31951845 |
T |
|
| Q |
301 |
atttgaatcccccgttcaatttcaatatattctttgtaaattattatttacattcattattatcttaaccatatttataattgattccaattgaacaaca |
400 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
31951846 |
acttgaatcccccattcaatttcaatatattctttttacattattatttacattcattattatcttaaccatatttataattgattccaattgaacgaca |
31951945 |
T |
|
| Q |
401 |
ctaagatctgtgaagccttattttacccacatattgtgttaagttgttcaaatttattaaacatttatgtctaaacct |
478 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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|
| T |
31951946 |
ctaagatctatgaagccttattttacccacatattgtgttaagctgttcaaatttgttaaacatttatgtctaaacct |
31952023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 3 - 476
Target Start/End: Complemental strand, 31951047 - 31950574
Alignment:
| Q |
3 |
ttgtatgtggccggtgtgcaagtttttaatccagctaccgttattgtatgtgaggtttctcctagacatggaaatggtctggaattttctcccaaaacaa |
102 |
Q |
| |
|
||||||||||| | || ||||| ||||||||||||||||||||||||||| |||||||||| | ||||||||| ||||||||||||| ||||||| |||| |
|
|
| T |
31951047 |
ttgtatgtggctgctgcgcaagcttttaatccagctaccgttattgtatgggaggtttctcatggacatggaactggtctggaatttgctcccaagacaa |
31950948 |
T |
|
| Q |
103 |
gtattacaacttcagcacctcttagcccacccaactagagtggttttgctcctttagctgcctttttgttcagcatatgtgagttctgaagttgcgccca |
202 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| | || |
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|
| T |
31950947 |
gtattacaacttcaacacctcttagcccacccaactggagtggttttgctcctttagctgcctttttgttcagtatatgtgagttttgaagctgcactca |
31950848 |
T |
|
| Q |
203 |
ctacccagtgttgtggtgtagcaggggtagcctttgatctgatgtgtggtggttctgtgatagttgttttcgtagttgagggtatgtacataattctaat |
302 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||| || |||||| |||||||||||||| || |||||||||||||||||||||||||||||| |
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|
| T |
31950847 |
ctaccaagtgttgtggtgtagtaggggtagcctttgatccgacatgtggttgttctgtgatagtttttgtcgtagttgagggtatgtacataattctaac |
31950748 |
T |
|
| Q |
303 |
ttgaatcccccgttcaatttcaatatattctttgtaaattattatttacattcattattatcttaaccatatttataattgattccaattgaacaacact |
402 |
Q |
| |
|
|||||||||| |||||||||| |||||| | |||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||| |
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|
| T |
31950747 |
ttgaatcccctcttcaatttcattatattttgtgtacattattatttacattcattattatcctaaccatatttataactgattccaattgaacgacact |
31950648 |
T |
|
| Q |
403 |
aagatctgtgaagccttattttacccacatattgtgttaagttgttcaaatttattaaacatttatgtctaaac |
476 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||||| ||||||||||| |||||||||||| ||||||| |
|
|
| T |
31950647 |
aagatctgtgaagctttattttacctacatattgtgttaagctgttcaaattttttaaacatttatatctaaac |
31950574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 171 - 478
Target Start/End: Complemental strand, 3498361 - 3498060
Alignment:
| Q |
171 |
ttcagcatatgtgagttctgaagttgcgcccactacccagtgttgtggtgtagcaggggtagcctttgatctgatgtgtggtggttctgtgatagttgtt |
270 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||| || | |
|
|
| T |
3498361 |
ttcagcatatgtgagttctgaagctgcaccctctacccagtgttgtggtgtagcaggggtagcctttgatccaacgcgtggtggttctgtgatagctgct |
3498262 |
T |
|
| Q |
271 |
ttcgtagttgagggtatgtacataattctaatttgaatcccccgttcaatttcaatatattctttgtaaattattatttacattcattattatcttaacc |
370 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
3498261 |
gttgtagttgagggtatgtacataattctaacttgaatcc-----tcaatttcaatatattctttgtacattattatttacattcattattatcctaacc |
3498167 |
T |
|
| Q |
371 |
atatttat-aattgattccaattgaacaacactaagatctgtgaagccttattttacccacatattgtgttaagttgttcaaatttattaaacatttatg |
469 |
Q |
| |
|
|||||||| || | ||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
3498166 |
atatttataaactaattacaattgaatggcactaagatctgtgaagccttattttacc--catattgtgttaaactgttcaagttttttaaacatttatg |
3498069 |
T |
|
| Q |
470 |
tctaaacct |
478 |
Q |
| |
|
||||||||| |
|
|
| T |
3498068 |
tctaaacct |
3498060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 3498576 - 3498410
Alignment:
| Q |
9 |
gtggccggtgtgcaagtttttaatccagctaccgttattgtatgtgaggtttctcctagacatggaaatggtctggaattttctcccaaaacaagtatta |
108 |
Q |
| |
|
||||||||||||| || ||||| ||||||||||||||| ||||| | ||||| ||| |||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3498576 |
gtggccggtgtgctagcttttagtccagctaccgttatagtatgggtggttttgcctggacagggaaatggtctggaattttctcccaagacaagtatta |
3498477 |
T |
|
| Q |
109 |
caacttcagcacctcttagcccacccaactagagtggttttgctcctttagctgcctttttgttcag |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||| |||||| |||||||||||||||| |
|
|
| T |
3498476 |
caacttcagcacctcttagcccacccaactggattggttttgcccctttacctgcctttttgttcag |
3498410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 199 - 422
Target Start/End: Complemental strand, 3510507 - 3510281
Alignment:
| Q |
199 |
cccactacccagtgttgtggtgtagcaggggtagcctttgatctgatgtgtggtggttctgtgatagttgttttcgtagttgagggtatgtacataattc |
298 |
Q |
| |
|
||||||||| ||||| |||||||||||||| |||||| |||| || ||| ||||||||||||| || | | |||||||||||||| | || |||| |
|
|
| T |
3510507 |
cccactacctggtgttctggtgtagcaggggcagccttcgatccgactcgtgacggttctgtgatagctgctgtgatagttgagggtatgcatatgattc |
3510408 |
T |
|
| Q |
299 |
taatttgaatcccccgt---tcaatttcaatatattctttgtaaattattatttacattcattattatcttaaccatatttataattgattccaattgaa |
395 |
Q |
| |
|
| | |||| ||||| ||||||||||||||||||||||| |||||||||||||||| | ||||||| |||||||||||||| |||| ||||||||| |
|
|
| T |
3510407 |
tgacttgatcttcccgtccttcaatttcaatatattctttgtacattattatttacattcgtcattatctaaaccatatttataactgataccaattgaa |
3510308 |
T |
|
| Q |
396 |
caacactaagatctgtgaagccttatt |
422 |
Q |
| |
|
||| ||||||||||||| |||||| |
|
|
| T |
3510307 |
tggcaccaagatctgtgaagtcttatt |
3510281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 3510735 - 3510582
Alignment:
| Q |
8 |
tgtggccggtgtgcaagtttttaatccagctaccgttattgtatgtgaggtttctcctagacatggaaatggtctggaattttctcccaaaacaagtatt |
107 |
Q |
| |
|
|||||||||||||| || | ||||||||||| || |||||||||| |||||| ||| | | ||||||| |||| ||||||||||||| | |||||| |
|
|
| T |
3510735 |
tgtggccggtgtgccagctgttaatccagctgccattattgtatgggaggttatgcctggtcgtggaaatagtctccaattttctcccaagaaaagtatc |
3510636 |
T |
|
| Q |
108 |
acaacttcag---cacctcttagcccacccaactagagtggttttgctccttta |
158 |
Q |
| |
|
| | | | ||||||||||| ||||||||| |||||||||||| |||||| |
|
|
| T |
3510635 |
aataatggcgtgccacctcttagcgcacccaactggagtggttttgcaccttta |
3510582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 315 - 429
Target Start/End: Original strand, 22927361 - 22927475
Alignment:
| Q |
315 |
ttcaatttcaatatattctttgtaaattattatttacattcattattatcttaaccatatttataattgattccaattgaacaacactaagatctgtgaa |
414 |
Q |
| |
|
|||| ||| ||||||||||||||| |||||||||||||||||| ||||| |||||||||| ||||| | ||||||||||| ||| |||||||| |||| |
|
|
| T |
22927361 |
ttcagttttaatatattctttgtacattattatttacattcatcattattttaaccatatatataactatttccaattgaatgacattaagatctatgaa |
22927460 |
T |
|
| Q |
415 |
gccttattttaccca |
429 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
22927461 |
gccttattttaccca |
22927475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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