View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11892_low_9 (Length: 463)
Name: NF11892_low_9
Description: NF11892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11892_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 268
Target Start/End: Complemental strand, 30891953 - 30891698
Alignment:
| Q |
13 |
atggacatcatacatatattctaatccctcgagtcggataggaccacaaagggtggtaaagttctccgtcaagagatatagactagtttgaattctgaga |
112 |
Q |
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| T |
30891953 |
atggtcattatacatatattctaatccctcgagtcggataggaccacagagggtggtaaagttctccgtcaagagatatagactagtttgaattctgaga |
30891854 |
T |
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| Q |
113 |
aattaaaagtatcaatttgatcttaaaaaatttaatgtcgcttaaaatagtcttgcatacagactaatatccttaaaaattcctagaagtgactaagaat |
212 |
Q |
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| T |
30891853 |
aatgaaaagtatcaatttgatcttaaaaaatttcatgtcgcttaaaatagtcttgcatacagactaatatccttaaaaattcctagaagtgactaagaat |
30891754 |
T |
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| Q |
213 |
aaattgtacttttcatttctctacgatcaactaagtctcaatctatgaactaccga |
268 |
Q |
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| T |
30891753 |
gaatcgtacttttcatttctctacgatcaactaggtctcaatctatgaactaccga |
30891698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 252 - 449
Target Start/End: Complemental strand, 30891684 - 30891488
Alignment:
| Q |
252 |
aatctatgaactaccgacaatgatacggattccaaacacgacaatgacactaacatgtggtcattgtcagtaatttgagaaaatgtaagtgattgaatat |
351 |
Q |
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||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30891684 |
aatctatgaactaccgacaatgatacggattacaaagacgacaatgacactaacatgtggtcattgtcagtaatttgagaaaatgtaagcgattgaatat |
30891585 |
T |
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| Q |
352 |
tttaactaaatgtgtcggtgttgtgtcgttttccgacactaatatgtgttggacaacaaacacgcctttaactaaatgtgtcggtgtcatgtcgtttt |
449 |
Q |
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| T |
30891584 |
tttaactaaatgtgtcggtgtcgtgtcgttttccgacactaatatgtgttggacaacaaacacgcc-ttaactaaatgtgtcggtgtcatgtcgtttt |
30891488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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