View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11893_high_11 (Length: 294)
Name: NF11893_high_11
Description: NF11893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11893_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 32087237 - 32086967
Alignment:
| Q |
18 |
aataatagtctcaaattcatagagatctctacttcaagacttattgtgtgtttggtcttttaaaaagttgttgtgtgatggtatgtttggagcttcaaaa |
117 |
Q |
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| T |
32087237 |
aataatagtctcaaattcatagagatctctacttcaagacttattgtgtgtttggtattttaaaaagttgttgtgtgacggtatgtttggagcttcaaaa |
32087138 |
T |
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| Q |
118 |
aacctgcagtgagagagggctaatacgtggtagtggtgacttgttgggttaccacttaccaaacacattattagtacaatccatatcgatttttgtatta |
217 |
Q |
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| T |
32087137 |
agcctacaatgagagagggctaatacgtggtagtggtgacttgctgggttaccacttaccaaacacattattagtacaatccatattgatttttgtatta |
32087038 |
T |
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| Q |
218 |
aactcaaagattatgatgtgaactaaaatattgttggctcaaccaagttcttcaagaagtccctatgcttc |
288 |
Q |
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| T |
32087037 |
aactcaaagattatgatgtgaactaaaatattgttggttcaaccaagttcttcaagaagtcccaatgcttc |
32086967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 280
Target Start/End: Complemental strand, 32085320 - 32085213
Alignment:
| Q |
173 |
ttaccaaacacattattagtacaatccatatcgatttttgtattaaactcaaagattatgatgtgaactaaaatattgttggctcaaccaagttcttcaa |
272 |
Q |
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| T |
32085320 |
ttaccaaacacagtattagtacaattcaagtcgatttttgcatcaaactctaagactgcggtgtgaattgaaagatcgttgggtcaatcaagtgcttcaa |
32085221 |
T |
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| Q |
273 |
gaagtccc |
280 |
Q |
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| T |
32085220 |
taagtccc |
32085213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 32085461 - 32085386
Alignment:
| Q |
18 |
aataatagtctcaaattcatagagatctctacttcaagacttattgtgtgtttggtcttttaaaaagttgttgtgt |
93 |
Q |
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|||||||||||| |||||| |||||| |||| || ||||| |||||||||| || |||||||||||||| |||| |
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| T |
32085461 |
aataatagtctcgaattcaaagagatatctattttgggacttgttgtgtgttttgtattttaaaaagttgtcgtgt |
32085386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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