View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11893_high_15 (Length: 240)
Name: NF11893_high_15
Description: NF11893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11893_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 51729740 - 51729517
Alignment:
| Q |
1 |
ttgttgacgtgcggtatatatgggaccttactagatagataattagcacaatggcatgaagatataatttgattctcactacgtttccttccccttaatg |
100 |
Q |
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| T |
51729740 |
ttgttgacgtgcggtatatacgggaccttactagatagataattagcacaatggcatgaagatataatttgattctcactacgtttccttccccttaatg |
51729641 |
T |
|
| Q |
101 |
gacatagaaagagaagaaagtgatagagagatcattaccatagatctactacgtgataagtcgaacgagatcatcatacataaatgaacatcctgtctag |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51729640 |
gacatagaaagagaagaaagtgacagagagatcattaccatagatctactacgtgataagtcgaacgagatcatcatacataaatgaacatcctgtctag |
51729541 |
T |
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| Q |
201 |
catattttatccgaaaggtctgtg |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
51729540 |
catattttatccgaaaggtctgtg |
51729517 |
T |
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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 351475 - 351423
Alignment:
| Q |
164 |
aacgagatcatcatacataaatgaacatcctgtctagcatattttatccgaaa |
216 |
Q |
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||||||| |||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
351475 |
aacgagaccatcatacataaatgaacatcctgccgagcatattttatccgaaa |
351423 |
T |
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