View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11893_high_8 (Length: 312)
Name: NF11893_high_8
Description: NF11893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11893_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 47299354 - 47299076
Alignment:
| Q |
19 |
catcaatctttcttctttagagcttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaatgcaccacattcgatcttatcacttcat |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47299354 |
catcaatctttcttctttagagcttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaatgcaccacattcgatcttatcgcttcat |
47299255 |
T |
|
| Q |
119 |
gtttttggtgttgtcgcacaaaagcattgcagttagaggcagatgaagaggtacgaatgatgtgcatcgccaatgcacgctcaaggtttaatgttaacaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47299254 |
gtttttggtgttgtcgcacaaaagcattgcagttagaggcagatgaagaggtacgaatgatgtgcatcgccaatgcacgctcgaggtttaatgttaacaa |
47299155 |
T |
|
| Q |
219 |
ttcgccacttgttggatactatggtaactgttttgcttacccagcggccgtcaccactgcaaggaagctttgtgaaaac |
297 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47299154 |
ttcgccacttgttggatactacggtaactgttttgcttacccagcggccgtcaccactgcaaggaagctttgtggaaac |
47299076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 47292747 - 47292474
Alignment:
| Q |
19 |
catcaatctttcttctttagagcttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaatgcaccacattcgatcttatcacttcat |
118 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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|
| T |
47292747 |
catcgatctttcttctttagagcttctgacatagctgcgcttcgtctcttggttccatttcaccttcgtcaatgcaccacatttgatcttatcgcttcat |
47292648 |
T |
|
| Q |
119 |
gtttttggtgttgtcgcacaaaagcattgcagttagaggcagatgaagaggtacgaatgatgtgcatcgccaatgcacgctcaaggtttaatgttaacaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||||| |||||||| ||||||| |
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| T |
47292647 |
gtttttggtgttgtcgcacaaaagcattgcagttagaggcggataaagaggtacgaatgatgtgcgtcgtcaatgcacgctcgaggtttaacattaacaa |
47292548 |
T |
|
| Q |
219 |
ttcgccacttgttggatactatggtaactgttttgcttacccagcggccgtcaccactgcaaggaagctttgtg |
292 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
47292547 |
ttcgccacttgttggatattacggtaactgttttgcttacccagcggccgtcaccactgcagggaagctttgtg |
47292474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 298
Target Start/End: Original strand, 47267501 - 47267780
Alignment:
| Q |
19 |
catcaatctttcttctttagagcttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaatgcaccacattcgatcttatcacttcat |
118 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| | ||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||| |
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|
| T |
47267501 |
catcaatctttcttctttaggacttcagacattgttgtgcttcgtctcttggttccatttcaccttcgccattgtaccacattcgatcttatcacttcat |
47267600 |
T |
|
| Q |
119 |
gtttttggtgttgtcgcacaaaagcattgcagttagaggcagatgaagaggtacgaatgatgtgcatcgccaatgcacgctcaaggtttaatgttaacaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| || | ||||||||| || |||||||||| |||||| |
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|
| T |
47267601 |
gtttttggtgttgtcgcacaaaagcattgcagttagaggcagatgacgagatacgaatgatgtgtattgtcaatgcacgttcgaggtttaatgctaacaa |
47267700 |
T |
|
| Q |
219 |
ttcgccacttgttggatactatggtaactgttttgcttacccagcggccgtcaccactgcaaggaagctttgtgaaaact |
298 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| |||||||||||| ||||| |
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|
| T |
47267701 |
ttcgccacttgttggatactacggtaattgttttgcttacccggcggccgtcaccactgcagggaagctttgtggaaact |
47267780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 19 - 297
Target Start/End: Original strand, 47283466 - 47283744
Alignment:
| Q |
19 |
catcaatctttcttctttagagcttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaatgcaccacattcgatcttatcacttcat |
118 |
Q |
| |
|
||||||||||||||||||| | |||| ||||||| || | |||| |||| |||||||||||||||||||||||| ||||| ||||||||||| ||| |
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|
| T |
47283466 |
catcaatctttcttctttacactttctcacatagctgcaatccgtcacttgattccatttcaccttcgtcaatgcagtacatttgatcttatcaccgcat |
47283565 |
T |
|
| Q |
119 |
gtttttggtgttgtcgcacaaaagcattgcagttagaggcagatgaagaggtacgaatgatgtgcatcgccaatgcacgctcaaggtttaatgttaacaa |
218 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||| |||||||||| | | || | |
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|
| T |
47283566 |
gtttttggtgttgccgcacaaaagcattgcagttagagccagatgaagaagtacgaatgatgtgcatcgttaatgcacgttcaaggtttagggctgacca |
47283665 |
T |
|
| Q |
219 |
ttcgccacttgttggatactatggtaactgttttgcttacccagcggccgtcaccactgcaaggaagctttgtgaaaac |
297 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||| || || |||||||| ||| |||||||||||| |||| |
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|
| T |
47283666 |
ttcgccacttgttggatattatggtaactgttttgctttcccggctgctgtcaccaccgcagggaagctttgtggaaac |
47283744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 71 - 292
Target Start/End: Original strand, 47278925 - 47279146
Alignment:
| Q |
71 |
ttccatttcaccttcgtcaatgcaccacattcgatcttatcacttcatgtttttggtgttgtcgcacaaaagcattgcagttagaggcagatgaagaggt |
170 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| || ||||||||||||||||||||| |||||||||| || |
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|
| T |
47278925 |
ttccatttcaccttcgtcaatgcagtacatttgatcttatcaccgcatgtttttggtgttgccgtacaaaagcattgcagttagagccagatgaagaagt |
47279024 |
T |
|
| Q |
171 |
acgaatgatgtgcatcgccaatgcacgctcaaggtttaatgttaacaattcgccacttgttggatactatggtaactgttttgcttacccagcggccgtc |
270 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||| | | || ||||||||||||||||||| ||||||||||||||||||| ||| || || ||| |
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|
| T |
47279025 |
acgaatgatgtgcatcgttaatgcacgttcaaggtttagggctgaccattcgccacttgttggatattatggtaactgttttgctttcccggctgctgtc |
47279124 |
T |
|
| Q |
271 |
accactgcaaggaagctttgtg |
292 |
Q |
| |
|
||||| ||| |||||||||||| |
|
|
| T |
47279125 |
accaccgcagggaagctttgtg |
47279146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 59 - 297
Target Start/End: Original strand, 47256761 - 47257002
Alignment:
| Q |
59 |
ttcgtctcttggttccatttcaccttcgtcaatgcaccacattcgatcttatcacttcatgtttttggtgttgtcgcacaaaagcattgcagttagaggc |
158 |
Q |
| |
|
|||||| |||||||||| |||||||| || ||||| ||| ||||||||||||| |||||| |||||| || |||||||||||||||||| |||| | |
|
|
| T |
47256761 |
ttcgtcgcttggttccacttcacctttctcggtgcactgcatacgatcttatcactgcatgttattggtgctgccgcacaaaagcattgcaggtagaacc |
47256860 |
T |
|
| Q |
159 |
agatgaagaggtacgaatgatgtgcatcgccaatgcacgctcaaggtttaatgttaacaa---ttcgccacttgttggatactatggtaactgttttgct |
255 |
Q |
| |
|
||||||||| || |||||||||||||||| ||||||||||| ||||||| || ||| || |||| | || ||||||| ||||| |||||| ||||| |
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|
| T |
47256861 |
agatgaagatgtgcgaatgatgtgcatcgttaatgcacgctcgaggtttagtgctaataaccgttcgtcgctcattggatattatggcaactgtattgct |
47256960 |
T |
|
| Q |
256 |
tacccagcggccgtcaccactgcaaggaagctttgtgaaaac |
297 |
Q |
| |
|
| | | ||||| |||||||| |||| | ||||||||| |||| |
|
|
| T |
47256961 |
ttctcggcggcagtcaccaccgcaaaggagctttgtggaaac |
47257002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 66 - 297
Target Start/End: Original strand, 47242640 - 47242875
Alignment:
| Q |
66 |
cttggttccatttcaccttcgtcaatgcaccacattc----gatcttatcacttcatgtttttggtgttgtcgcacaaaagcattgcagttagaggcaga |
161 |
Q |
| |
|
|||||||||| ||||||||| ||| ||||| ||||| |||||||||||| ||| || |||||| || |||||||||||||||||| ||||| |||| |
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|
| T |
47242640 |
cttggttccaattcaccttcatcattgcactacattaatttgatcttatcactgcatattattggtgctgccgcacaaaagcattgcagatagagccaga |
47242739 |
T |
|
| Q |
162 |
tgaagaggtacgaatgatgtgcatcgccaatgcacgctcaaggtttaatgttaacaattcgccacttgttggatactatggtaactgttttgcttaccca |
261 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| || ||||||| || |||| ||| |||||||||| || ||||| || |||||| | | |
|
|
| T |
47242740 |
tgaagaggtacgaatgatgtgcatcgttaatgcacgttccaggtttagtgctaacccttctttgtttgttggatattacggtaattgcattgctttctcg |
47242839 |
T |
|
| Q |
262 |
gcggccgtcaccactgcaaggaagctttgtgaaaac |
297 |
Q |
| |
|
||||| |||||||| |||| | ||||||||| |||| |
|
|
| T |
47242840 |
gcggctgtcaccaccgcaaaggagctttgtggaaac |
47242875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 297
Target Start/End: Original strand, 32731264 - 32731542
Alignment:
| Q |
19 |
catcaatctttcttctttagagcttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaatgcaccacattcgatcttatcacttcat |
118 |
Q |
| |
|
||||||||||||||||| | | || || ||||||| | ||||| |||||||||| ||||||||| ||| ||||| ||||| |||||||||| | ||| |
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|
| T |
32731264 |
catcaatctttcttcttcacacctgctcacatagctgcgattcgttgcttggttccaattcaccttcatcattgcactacatttgatcttatcagtgcat |
32731363 |
T |
|
| Q |
119 |
gtttttggtgttgtcgcacaaaagcattgcagttagaggcagatgaagaggtacgaatgatgtgcatcgccaatgcacgctcaaggtttaatgttaacaa |
218 |
Q |
| |
|
||| |||||| || |||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||| || ||||||| || |||| |
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|
| T |
32731364 |
gttattggtgctgccgcacaaaagcattgcagatagagccagatgaagaggtacgaatgatgtgcatcgttaatgcacgttccaggtttagtgctaaccc |
32731463 |
T |
|
| Q |
219 |
ttcgccacttgttggatactatggtaactgttttgcttacccagcggccgtcaccactgcaaggaagctttgtgaaaac |
297 |
Q |
| |
|
||| || ||||||| || ||||| ||| |||||| | | ||||| |||||||| |||| | ||||||||| |||| |
|
|
| T |
32731464 |
ttctttgtttattggatattacggtaattgtattgctttctcggcggctgtcaccaccgcaaaggagctttgtggaaac |
32731542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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