View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11893_low_1 (Length: 519)

Name: NF11893_low_1
Description: NF11893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11893_low_1
NF11893_low_1
[»] chr7 (1 HSPs)
chr7 (7-519)||(48483890-48484403)
[»] chr8 (2 HSPs)
chr8 (36-166)||(10036530-10036660)
chr8 (310-406)||(10036323-10036419)
[»] scaffold0097 (4 HSPs)
scaffold0097 (37-145)||(10156-10264)
scaffold0097 (29-143)||(1176-1289)
scaffold0097 (38-142)||(1371-1475)
scaffold0097 (103-145)||(10391-10433)
[»] chr2 (5 HSPs)
chr2 (37-145)||(20706082-20706190)
chr2 (60-145)||(42559287-42559372)
chr2 (62-145)||(20856991-20857074)
chr2 (103-145)||(20706317-20706359)
chr2 (87-145)||(20857197-20857255)
[»] chr3 (1 HSPs)
chr3 (91-151)||(41529049-41529109)


Alignment Details
Target: chr7 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 7 - 519
Target Start/End: Original strand, 48483890 - 48484403
Alignment:
Q  7 caaagaaaagattaaatgtagatgacatgccttttactggacagaggcagcactctctttcaacatctggagtttcacacactctacaaacccaggaagt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48483890 caaagaaaagattaaatgtagatgacatgccttttactggacagaggcagcactctctttcaacatctggagtttcacacactctacaaacccaggaagt 48483989  T
Q  107 aaaatcttgaacattctttgcaccatagcactcttggtgaacagcaacttggcatctgcaaatgaactgcaacttagcactcttgatgcacgtgaagtaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48483990 aaaatcttgaacattctttgcaccatagcactcttggtgaacagcaacttggcatctgcaaatgaactgcaacttagcactcttgatgcacgtgaagtaa 48484089  T
Q  207 ttcatttttgatcctttaaagttttgtaaatcagaaagagaatttcaaaatatctgtaataactttacaacttggggatggaaatcatg-acgatgatta 305  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  48484090 ttcacgtttgatcctttaaagttttgtaaatcagaaagagaatttcaaaatatctgtaataactttacaacttggggatggaaatcatgaacgatgatta 48484189  T
Q  306 tagcacctgttacatataataatcttgttatcttcccaatcttctacccatctgcaaatcgcacatctctctgttgtccattttgcataaactggttcat 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48484190 tagcacctgttacatataataatcttgttatcttcccaatcttctacccatctgcaaatcgcacatctctctgttgtccattttgcataaactggttcat 48484289  T
Q  406 atttttctgaggcaataaagtaaaagtaaactaagtttctccatttcaaaaatgtatttgaaagagaacatgagactgaaatgcaccataagacctgatc 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  48484290 atttttctgaggcaataaagtaaaagtaaactaagtttctccatttcaaaaatgtatttgaaagagaacataagactgaaatgtaccataagacctgatc 48484389  T
Q  506 atgtacaagaaatg 519  Q
    ||||||||||||||    
T  48484390 atgtacaagaaatg 48484403  T

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Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 36 - 166
Target Start/End: Complemental strand, 10036660 - 10036530
Alignment:
Q  36 ccttttactggacagaggcagcactctctttcaacatctggagtttcacacactctacaaacccaggaagtaaaatcttgaacattctttgcaccatagc 135  Q
    |||||||||||||| ||||||||||||||||||||||| || ||||| || ||||| || ||||| ||||||||||| || |||| ||||||||||||||    
T  10036660 ccttttactggacaaaggcagcactctctttcaacatcaggggtttcgcatactctgcatacccaagaagtaaaatcctggacatgctttgcaccatagc 10036561  T
Q  136 actcttggtgaacagcaacttggcatctgca 166  Q
    | || ||||| || || | ||||||||||||    
T  10036560 attcctggtggactgctatttggcatctgca 10036530  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 406
Target Start/End: Complemental strand, 10036419 - 10036323
Alignment:
Q  310 acctgttacatataataatcttgttatcttcccaatcttctacccatctgcaaatcgcacatctctctgttgtccattttgcataaactggttcata 406  Q
    ||||||| || || ||||| |||||||| ||  | ||||| | |||||| ||||| |||||||| ||||| ||||||||||||| |||||| |||||    
T  10036419 acctgttgcagatgataattttgttatcctcatagtcttcgatccatctacaaatagcacatctttctgtcgtccattttgcatgaactggctcata 10036323  T

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Target: scaffold0097 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 10264 - 10156
Alignment:
Q  37 cttttactggacagaggcagcactctctttcaacatctggagtttcacacactctacaaacccaggaagtaaaatcttgaacattctttgcaccatagca 136  Q
    ||||||||||||| ||||| ||||||||||||||||| |||||||| || |||||| |||||||  |||||||||| ||||||| || ||||||||||||    
T  10264 cttttactggacaaaggcaacactctctttcaacatcaggagtttcgcatactctagaaacccaataagtaaaatcctgaacatgctctgcaccatagca 10165  T
Q  137 ctcttggtg 145  Q
     ||||||||    
T  10164 ttcttggtg 10156  T

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Target: scaffold0097; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 1289 - 1176
Alignment:
Q  29 tgacatgccttttactggacagaggcagcactctctttcaacatctggagtttcacacactctacaaacccaggaagtaaaatcttgaacattctttgca 128  Q
    |||| |||||||||||| ||| ||||| ||||||||||||||||| |||||||| || ||||||  || ||| ||||||||||| ||||||| || ||||    
T  1289 tgacgtgccttttactgtacaaaggcaacactctctttcaacatcaggagtttcgcatactcta-gaatccaagaagtaaaatcatgaacatgctctgca 1191  T
Q  129 ccatagcactcttgg 143  Q
    |||||||| ||||||    
T  1190 ccatagcattcttgg 1176  T

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Target: scaffold0097; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 142
Target Start/End: Original strand, 1371 - 1475
Alignment:
Q  38 ttttactggacagaggcagcactctctttcaacatctggagtttcacacactctacaaacccaggaagtaaaatcttgaacattctttgcaccatagcac 137  Q
    |||||||||||| ||| | || |||||||||||||  | ||||||  | |||||| |||| || |||||||||||||||||||  ||||||||||||||     
T  1371 ttttactggacaaaggaaacaatctctttcaacattagaagtttcgaatactctaaaaactcaagaagtaaaatcttgaacatattttgcaccatagcat 1470  T
Q  138 tcttg 142  Q
    |||||    
T  1471 tcttg 1475  T

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Target: scaffold0097; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 10391 - 10433
Alignment:
Q  103 aagtaaaatcttgaacattctttgcaccatagcactcttggtg 145  Q
    |||||||||||||||||| ||||||||||||| | ||||||||    
T  10391 aagtaaaatcttgaacatgctttgcaccatagtattcttggtg 10433  T

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Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 20706190 - 20706082
Alignment:
Q  37 cttttactggacagaggcagcactctctttcaacatctggagtttcacacactctacaaacccaggaagtaaaatcttgaacattctttgcaccatagca 136  Q
    ||||||||||||| ||||| ||||||||||||||||| |||||||| || |||||| |||||||  |||||||||| ||||||| || ||||||||||||    
T  20706190 cttttactggacaaaggcaacactctctttcaacatcaggagtttcgcatactctagaaacccaataagtaaaatcctgaacatgctctgcaccatagca 20706091  T
Q  137 ctcttggtg 145  Q
     ||||||||    
T  20706090 ttcttggtg 20706082  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 42559287 - 42559372
Alignment:
Q  60 tctctttcaacatctggagtttcacacactctacaaacccaggaagtaaaatcttgaacattctttgcaccatagcactcttggtg 145  Q
    |||||||||||||| ||||||||| |  ||||||||||| | ||||||||||| ||||||| ||||||||||||||| ||||||||    
T  42559287 tctctttcaacatcaggagtttcaaatgctctacaaacctaagaagtaaaatcctgaacatgctttgcaccatagcattcttggtg 42559372  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 62 - 145
Target Start/End: Complemental strand, 20857074 - 20856991
Alignment:
Q  62 tctttcaacatctggagtttcacacactctacaaacccaggaagtaaaatcttgaacattctttgcaccatagcactcttggtg 145  Q
    |||||||||||   ||||||| || |||||| ||||||| |||||||||||  |||||| || |||||||||||| ||||||||    
T  20857074 tctttcaacattaagagtttcgcatactctagaaacccaagaagtaaaatccagaacatgctctgcaccatagcattcttggtg 20856991  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 20706317 - 20706359
Alignment:
Q  103 aagtaaaatcttgaacattctttgcaccatagcactcttggtg 145  Q
    |||||||||||||||||| ||||||||||||| | ||||||||    
T  20706317 aagtaaaatcttgaacatgctttgcaccatagtattcttggtg 20706359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 20857197 - 20857255
Alignment:
Q  87 actctacaaacccaggaagtaaaatcttgaacattctttgcaccatagcactcttggtg 145  Q
    |||||| |||| || ||||||||||||||| ||| |||||||||||| || ||||||||    
T  20857197 actctaaaaactcaagaagtaaaatcttgaccatgctttgcaccataacattcttggtg 20857255  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 41529049 - 41529109
Alignment:
Q  91 tacaaacccaggaagtaaaatcttgaacattctttgcaccatagcactcttggtgaacagc 151  Q
    |||| |||||||| ||||| ||| ||||||| ||||| |||||||| ||||||||||||||    
T  41529049 tacagacccaggatgtaaagtctcgaacattttttgctccatagcattcttggtgaacagc 41529109  T

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