View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11893_low_10 (Length: 294)
Name: NF11893_low_10
Description: NF11893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11893_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 38942312 - 38942033
Alignment:
| Q |
1 |
tcagctccatctgcatagtgatatagatatagatagataagnnnnnnntaaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38942312 |
tcagctccatctgcatagtgatatagatatagatagataagaaaaaaataaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatatca |
38942213 |
T |
|
| Q |
101 |
aaaaaccaaatgcaatagaagctaaactactactagtgagtcatacccctacttgtgaatctgattcttcaggtccctctttctcctcagtgaccttgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38942212 |
aaaaaccaaatgcaatagaagctaaactactactagtgagtcatacccctacttgtgaatctgattcttcaggtccctctttctcctcagtgaccttgag |
38942113 |
T |
|
| Q |
201 |
ctgtctgccctttctatctttgaccagtccatcacnnnnnnnctcagccatggcttgtgcatctttcatcggtttctttt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38942112 |
ctgtctgccctttctatctttgaccagtccatcactttttttctcagccatggcttgtgcatctttcatcggtttctttt |
38942033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 38942032 - 38941753
Alignment:
| Q |
1 |
tcagctccatctgcatagtgatatagatatagatagataagnnnnnnntaaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38942032 |
tcagctccatctgcatagtgatatagatatagatagataagaaaaaaataaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatatca |
38941933 |
T |
|
| Q |
101 |
aaaaaccaaatgcaatagaagctaaactactactagtgagtcatacccctacttgtgaatctgattcttcaggtccctctttctcctcagtgaccttgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38941932 |
aaaaaccaaatgcaatagaagctaaactactactggtgagtcatacccctacttgtgaatctgattcttcaggtccctctttctcctcagtgaccttgag |
38941833 |
T |
|
| Q |
201 |
ctgtctgccctttctatctttgaccagtccatcacnnnnnnnctcagccatggcttgtgcatctttcatcggtttctttt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38941832 |
ctgtctgccctttctatctttgaccagtccatcactttttttctcagccatggcttgtgcatctttcatcggtttctttt |
38941753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 38942594 - 38942313
Alignment:
| Q |
1 |
tcagctccatctgcatagtgatatagatata--gatagataagnnnnnnntaaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatat |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38942594 |
tcagctccatctgcatagtgatatagatatatagatagataagaaaaaaataaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatat |
38942495 |
T |
|
| Q |
99 |
caaaaaaccaaatgcaatagaagctaaactactactagtgagtcatacccctacttgtgaatctgattcttcaggtccctctttctcctcagtgaccttg |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38942494 |
caaaaaaccaaatgcaatagaagctaaactcctactagtgagtcatacccctacttgtgaatctgattcttcaggtccctctttctcctcagtgaccttg |
38942395 |
T |
|
| Q |
199 |
agctgtctgccctttctatctttgaccagtccatcacnnnnnnnctcagccatggcttgtgcatctttcatcggtttctttt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38942394 |
agctgtctgccctttctatctttgaccagtccatcactttttttctcagccatggcttgtgcatctttcatcggtttctttt |
38942313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 49 - 280
Target Start/End: Complemental strand, 38942826 - 38942595
Alignment:
| Q |
49 |
taaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatatcaaaaaaccaaatgcaatagaagctaaactactactagtgagtcataccc |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||| |||||||||||| |
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| T |
38942826 |
taaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatattcaaaaaccaaatgcaatagaagttaaaccactactattgagtcataccc |
38942727 |
T |
|
| Q |
149 |
ctacttgtgaatctgattcttcaggtccctctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtccatcacnnnnnnnctcagc |
248 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38942726 |
ctacttgtgaaactgattcttcaggtccctctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtccatcacttttttcctcagc |
38942627 |
T |
|
| Q |
249 |
catggcttgtgcatctttcatcggtttctttt |
280 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |
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| T |
38942626 |
cttggcttgtgcatctttcatcggtttctttt |
38942595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 38941752 - 38941453
Alignment:
| Q |
1 |
tcagctccatctgcatagtgatatagatata--gatagataagnnnnnnntaaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatat |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38941752 |
tcagctccatctgcatagtgatatagatatatagatagataagaaaaaaataaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatat |
38941653 |
T |
|
| Q |
99 |
caaaaaaccaaatgcaatagaagctaaactactact------------------agtgagtcatacccctacttgtgaatctgattcttcaggtccctct |
180 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| |||||||| |||||||| || ||||||||||||||||||||||||| |
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| T |
38941652 |
taaaaaaccaaatgcaataggagttaaactactactagtgcgtactactgtactagtgagtcgtacccctaattctgaatctgattcttcaggtccctct |
38941553 |
T |
|
| Q |
181 |
ttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtccatcacnnnnnnnctca---gccatggcttgtgcatctttcatcggtttct |
277 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||| ||| |||||||||||||||||||| |||||| |
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|
| T |
38941552 |
ttctcctcagtgaccttgagctgtcttccctttctatctttgaccagttcatcactttttttctcagccgccttggcttgtgcatctttcatcagtttct |
38941453 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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