View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11893_low_12 (Length: 265)
Name: NF11893_low_12
Description: NF11893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11893_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 30 - 250
Target Start/End: Original strand, 31714243 - 31714463
Alignment:
| Q |
30 |
aagtgtggtgattgagaagtgtggtgaaatgttcaatggattggaatcattggttgatgttggaggaggcacagggaccatggcaaaggctcttgccaaa |
129 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31714243 |
aagtgtggtgattgagaagtgtggtggagtgttcaatggattggaatcattggttgatgttggaggaggcacagggaccatggcaaaggctcttgccaaa |
31714342 |
T |
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| Q |
130 |
tcattcccacaaatggaccgcactgtgtttgatcttccacatgttgttgatggcttgcaaggagttgataacttaaactatgttggtggagacatgtttg |
229 |
Q |
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|||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
31714343 |
tcattcccacaattagagtgcactgtgtttgatcttccacatgttgttgatggcttgcaaggaggtgataacttaaactatgttggtggagatatgttta |
31714442 |
T |
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| Q |
230 |
agagaattcctccagctgatg |
250 |
Q |
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||||||||||||||||||||| |
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| T |
31714443 |
agagaattcctccagctgatg |
31714463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 59 - 228
Target Start/End: Original strand, 31684330 - 31684499
Alignment:
| Q |
59 |
tgttcaatggattggaatcattggttgatgttggaggaggcacagggaccatggcaaaggctcttgccaaatcattcccacaaatggaccgcactgtgtt |
158 |
Q |
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||||||||| | | || ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||| ||| || |
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| T |
31684330 |
tgttcaatgaagtcgagtcattggttgatgttggaggaggtacagggaccatggcaaaaactcttgccaaatcattcccacaaatggagtgcattgtatt |
31684429 |
T |
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| Q |
159 |
tgatcttccacatgttgttgatggcttgcaaggagttgataacttaaactatgttggtggagacatgttt |
228 |
Q |
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| T |
31684430 |
tgatcttccacatgttgttgatggtttgctaggaagtgaaaacttaaactatgttggtggagacatgttt |
31684499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 59 - 250
Target Start/End: Original strand, 31711303 - 31711494
Alignment:
| Q |
59 |
tgttcaatggattggaatcattggttgatgttggaggaggcacagggaccatggcaaaggctcttgccaaatcattcccacaaatggaccgcactgtgtt |
158 |
Q |
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||||||||| | | || ||||||||||||||||||||||| || ||||||||||||||| |||||| ||||||||||||||||||||| ||| |||||| |
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| T |
31711303 |
tgttcaatgaagttgagtcattggttgatgttggaggaggtacggggaccatggcaaagactcttgtcaaatcattcccacaaatggagtgcattgtgtt |
31711402 |
T |
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| Q |
159 |
tgatcttccacatgttgttgatggcttgcaaggagttgataacttaaactatgttggtggagacatgtttgagagaattcctccagctgatg |
250 |
Q |
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| T |
31711403 |
tgatcttccacatgttgttgatggcttgcaaggaagtgaaaagctaagatatgttggtggagacatgtttaaggaaattccaccagcagatg |
31711494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 59 - 228
Target Start/End: Original strand, 31734709 - 31734878
Alignment:
| Q |
59 |
tgttcaatggattggaatcattggttgatgttggaggaggcacagggaccatggcaaaggctcttgccaaatcattcccacaaatggaccgcactgtgtt |
158 |
Q |
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||||||||| ||| || ||||||||||||||||||||||| |||||||| ||||||||| || ||||||||||||||||||||||||| ||| |||||| |
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| T |
31734709 |
tgttcaatgaatttgagtcattggttgatgttggaggaggaacagggactatggcaaagacttttgccaaatcattcccacaaatggagtgcattgtgtt |
31734808 |
T |
|
| Q |
159 |
tgatcttccacatgttgttgatggcttgcaaggagttgataacttaaactatgttggtggagacatgttt |
228 |
Q |
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|||||| ||||||||||||||||| ||||||||| ||| || ||| |||||||||||||||||||||| |
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| T |
31734809 |
tgatctaccacatgttgttgatggtttgcaaggaagtgagaatctaagctatgttggtggagacatgttt |
31734878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 61 - 228
Target Start/End: Original strand, 31702871 - 31703038
Alignment:
| Q |
61 |
ttcaatggattggaatcattggttgatgttggaggaggcacagggaccatggcaaaggctcttgccaaatcattcccacaaatggaccgcactgtgtttg |
160 |
Q |
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|||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| | ||| |||| |
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| T |
31702871 |
ttcaatgggttggagtcattggttgatgttggaggtggcacagggaccatggcaaaggcccttgctaaatcattcccacaaatggagtttagtgtatttg |
31702970 |
T |
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| Q |
161 |
atcttccacatgttgttgatggcttgcaaggagttgataacttaaactatgttggtggagacatgttt |
228 |
Q |
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|||| |||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||| |
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| T |
31702971 |
atctaccacatgttgttgatggcttgcaaggtagtgagaatctaaactatgttggtggagacatgttt |
31703038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 67 - 231
Target Start/End: Original strand, 30570297 - 30570461
Alignment:
| Q |
67 |
ggattggaatcattggttgatgttggaggaggcacagggaccatggcaaaggctcttgccaaatcattcccacaaatggaccgcactgtgtttgatcttc |
166 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||| || | |||| |||| || ||||||||| | || || ||| ||| |||||||||| |
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| T |
30570297 |
ggattggaatcattggttgatgttggtggaggcatagggactattactaaggtcattgctaagtcattcccaaacattgagtgcattgtatttgatcttc |
30570396 |
T |
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| Q |
167 |
cacatgttgttgatggcttgcaaggagttgataacttaaactatgttggtggagacatgtttgag |
231 |
Q |
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||||||||||||||||||| |||||| ||| |||||||| |||||||| || |||||||||||| |
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| T |
30570397 |
cacatgttgttgatggcttacaaggaagtgaaaacttaaaatatgttggaggtgacatgtttgag |
30570461 |
T |
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